Korean Gastric cancers data

Dr Hark Kim
hkim@ncc.re.kr

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Dataset ID	Description	Technology	Samples
EGAD00001001984	To identify recurrent somatic alterations in this unique subset of gastric cancers, whole exome and SNP6 analyses were performed using frozen cancer tissue. The somatic mutation analyses were also performed using blood of the same patients.	Illumina HiSeq 2500	160
EGAD00001002187	To identify transcriptome profile in this unique subset of gastric cancers, RNA-seq analyses were performed using frozen cancer tissue. Adjacent normal tissue of the same patients were used in differently expressed gene selection and fusion gene prediction.	Illumina HiSeq 2500	138
EGAD00001003953	Fastq files for the whole genome sequencing data (Illumina HiSeq 2500; 32.6-fold) for two diffuse gastric cancers revealing the fusion breakpoints. 2102T: CTNND1-ARHGAP26 gene fusion (g.chr11:57,578,103-g.chr5:142,358,707) 354T: ANXA2-MYO9A gene fusion (g.chr15:60,656,550-g.chr15:72,157,966)	Illumina HiSeq 2500	2
EGAD00010000889	Gencode control samples using SNP6.0	SNP6.0	183