DAC

Korean Gastric cancers data

Dac ID Contact Person Email Access Information
EGAC00001000439 Hark Kyun Kim hkim [at] ncc [dot] re [dot] kr No additional information is available

This DAC controls 4 datasets:

Dataset ID Description Technology Samples
EGAD00001001984 To identify recurrent somatic alterations in this unique subset of gastric cancers, whole exome and SNP6 analyses were performed using frozen cancer tissue. The somatic mutation analyses were also performed using blood of the same patients. Illumina HiSeq 2500 160
EGAD00001002187 To identify transcriptome profile in this unique subset of gastric cancers, RNA-seq analyses were performed using frozen cancer tissue. Adjacent normal tissue of the same patients were used in differently expressed gene selection and fusion gene prediction. Illumina HiSeq 2500 138
EGAD00001003953 Fastq files for the whole genome sequencing data (Illumina HiSeq 2500; 32.6-fold) for two diffuse gastric cancers revealing the fusion breakpoints. 2102T: CTNND1-ARHGAP26 gene fusion (g.chr11:57,578,103-g.chr5:142,358,707) 354T: ANXA2-MYO9A gene fusion (g.chr15:60,656,550-g.chr15:72,157,966) Illumina HiSeq 2500 2
EGAD00010000889 Gencode control samples using SNP6.0 SNP6.0 183