DAC
University of Heidelberg MUO
| Dac ID | Contact Person | Access Information | |
|---|---|---|---|
| EGAC00001000470 | Stefan Duensing | stefan [dot] duensing [at] med [dot] uni-heidelberg [dot] de | No additional information is available |
This DAC controls 2 datasets:
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001002067 | Renal cell carcinoma (RCC) is a genomically heterogeneous tumor. In the present project, the question whether intratumoral heterogeneity follows a zonal pattern indicating spatial niches was addressed. Whole exome sequencing of 16 paired samples from tumor periphery and center revealed a number of region-specific functional SNVs and Indels. Therefore, RCCs are not composed of evenly admixed tumor cells but show topological differences in their clonal composition. | Illumina HiSeq 2500 | 16 |
| EGAD00001004887 | We performed multiregion whole exome sequencing of a total of 37 samples from five consecutive patients (normal tissue, n=5; primary tumors, n=16; tumor thrombi, n=16) to >35-fold target coverage. Matching primary tumor and venous tumor thrombus samples were analyzed. Four patients had a clear cell RCC, one patient had a poorly differentiated type II papillary RCC (RCC-VTT-04). The latter patient had a friable thrombus, the others were of solid consistency. | Illumina HiSeq 2500 | 37 |
