UAMS - Deidentified Data Transfer Agreement 2016 - EGA European Genome-Phenome Archive

Dac ID	Contact Person	Email	Access Information
EGAC00001000499	Fenghuang Zhan	fzhan [at] uams [dot] edu	No additional information is available

Dataset ID	Description	Technology	Samples
EGAD00001002165	Samples were sequenced from 33 multiple myeloma patients including tumor presentation and relapse samples and a matched patient control sample. Tumor DNA was isolated from CD138-positive plasma cells. Control DNA originated from peripheral blood leukapheresis products collected after induction therapy. Libraries were prepared using the SureSelectQXT sample prep kit and the SureSelect Clinical Research Exome kit (Agilent), with additional baits covering the Ig and MYC loci. Paired-end sequencing was performed to an average sequencing depth of 118× on a HiSeq2500 (Illumina).	Illumina HiSeq 2500	99
EGAD00001003988	Paired end Whole Exome Sequencing of fine-needle aspirates from 51 Mutliple Myeloma patients.	Illumina HiSeq 2000	176

Dataset ID

Description

Technology

Samples

EGAD00001002165

Samples were sequenced from 33 multiple myeloma patients including tumor presentation and relapse samples and a matched patient control sample. Tumor DNA was isolated from CD138-positive plasma cells. Control DNA originated from peripheral blood leukapheresis products collected after induction therapy. Libraries were prepared using the SureSelectQXT sample prep kit and the SureSelect Clinical Research Exome kit (Agilent), with additional baits covering the Ig and MYC loci. Paired-end sequencing was performed to an average sequencing depth of 118× on a HiSeq2500 (Illumina).

Illumina HiSeq 2500

EGAD00001003988

Paired end Whole Exome Sequencing of fine-needle aspirates from 51 Mutliple Myeloma patients.

Illumina HiSeq 2000

176

DAC

This DAC controls 2 datasets:

The European Genome-phenome Archive (EGA) is part of the ELIXIR infrastructure.