DAC

OREL DAC

Dac ID Contact Person Email Access Information
EGAC00001000630 John Dick jdick [at] uhnresearch [dot] ca No additional information is available

This DAC controls 3 datasets:

Dataset ID Description Technology Samples
EGAD00001003234 Aligned whole genome sequence from AML relapse project 33
EGAD00001003583 516 DNA samples were collected from individuals upon enrollment into the European Prospective Investigation into Cancer and Nutrition study between 1993 and 1998 across 17 different centers. 126bp pair-end reads sequencing data from the Illumina platform were converted to fastq format, the 2bp molecular barcode information at each read of the pair was trimmed and was written in the reads name. The Thymine nucleotide required for ligation was removed from the sequences. Burroughs-Wheeler Aligner (BWA-mem) was used for alignment of the processed fastq files to the reference hg19 genome, following indel-re-alignment using GATK. An in-house algorithm was written to collapse read families that share the same molecular barcode sequence 516
EGAD00001003816 HALT AML mRNA - RNASeq mapped reads 22