DAC

Egyptref Data Access Committee

Dac ID Contact Person Email Access Information
EGAC00001001525 Saleh Ibrahim saleh [dot] ibrahim [at] uksh [dot] de No additional information is available

This DAC controls 7 datasets:

Dataset ID Description Technology Samples
EGAD00001006034 This is the PacBio long read data used for performing de novo assembly of the EGYPT individual (mapped against GRCh38). Sequel 1
EGAD00001006035 10x Genomics linked read data used in variant phasing and de novo assembly scaffolding for the EGYPT individual (mapped against GRCh38). HiSeq X Ten 1
EGAD00001006036 This is the blood RNA-Seq read data used for expression analysis such as haplotypic expression (mapped against GRCh38). Illumina NovaSeq 6000 1
EGAD00001006037 High-coverage WGS HiSeq X Ten 9
EGAD00001006038 This data set contains for 10 Egyptian individuals the WGS reads mapping to chrM. These were subsequently used for haplogroup assignment. HiSeq X Ten 10
EGAD00001006039 This data set comprises WGS small variants and structural variants called in a cohort of 110 Egyptian individuals (10 individuals have been sequenced as part of this study and 100 are from EGAD00001001372/EGAD00001001380). 10
EGAD00001006040 This data set contains for 217 Egyptian individuals the amplicon sequencing reads mapping to chrM. These were subsequently used for haplogroup assignment. Illumina MiSeq 217