Egyptref Data Access Committee

Prof. Dr. Saleh M. Ibrahim
saleh.ibrahim@uksh.de

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Dataset ID	Description	Technology	Samples
EGAD00001006034	This is the PacBio long read data used for performing de novo assembly of the EGYPT individual (mapped against GRCh38).	Sequel	1
EGAD00001006035	10x Genomics linked read data used in variant phasing and de novo assembly scaffolding for the EGYPT individual (mapped against GRCh38).	HiSeq X Ten	1
EGAD00001006036	This is the blood RNA-Seq read data used for expression analysis such as haplotypic expression (mapped against GRCh38).	Illumina NovaSeq 6000	1
EGAD00001006037	High-coverage WGS	HiSeq X Ten	9
EGAD00001006038	This data set contains for 10 Egyptian individuals the WGS reads mapping to chrM. These were subsequently used for haplogroup assignment.	HiSeq X Ten	10
EGAD00001006039	This data set comprises WGS small variants and structural variants called in a cohort of 110 Egyptian individuals (10 individuals have been sequenced as part of this study and 100 are from EGAD00001001372/EGAD00001001380).		10
EGAD00001006040	This data set contains for 217 Egyptian individuals the amplicon sequencing reads mapping to chrM. These were subsequently used for haplogroup assignment.	Illumina MiSeq	217