DAC

Multimodal pathology NDS Oxford DAC

Dac ID Contact Person Email Access Information
EGAC00001001566 Clare Verrill clare [dot] verrill [at] nds [dot] ox [dot] ac [dot] uk No additional information is available

This DAC controls 3 datasets:

Dataset ID Description Technology Samples
EGAD00001006107 Whole Exome Sequencing was performed on radical prostatectomy formalin-fixed paraffin-embedded sample pairs (n = 6). Library prep was done by exon capture using the Illumina Truseq Exome kit and sequenced as 75bp paired end on Illumina NextSeq 500. Sequences were aligned to the human genome (hg38) using BWA. NextSeq 500 10
EGAD00001006108 RNA-Seq was performed on radical prostatectomy formalin-fixed paraffin-embedded sample pairs (n = 27). Library prep was done by removal of rRNA and sequenced as 75bp paired end on Illumina NextSeq 500. Sequences were aligned to the human genome (hg38) using STAR-Fusion. NextSeq 500 27
EGAD00001006109 smMIP-Seq was performed on radical prostatectomy formalin-fixed paraffin-embedded sample pairs (n = 18). Library prep was done by capture of targeted sequences with single molecule (unique molecular index) tagged molecular inversion probes (MIP) and sequenced as 75bp paired end on Illumina NextSeq 500. Sequences were aligned to the human genome (hg38) using BWA. NextSeq 500 36