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Zero Childhood Cancer

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ZERO Childhood Cancer
zerodac@ccia.org.au

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This DAC controls 15 datasets

Dataset ID	Description	Technology	Samples
EGAD00001006793	Whole genome sequencing of tumour (90X) - normal (30X) patient pair and bulk transcriptome sequencing (80M PE reads) of tumour sample.	HiSeq X Ten NextSeq 500	1
EGAD00001006794	Bulk RNA-seq data of tumour data.	NextSeq 500	1
EGAD00001006876	Bulk RNA-seq data of tumours in EGAS00001004572.	NextSeq 500	1
EGAD00001006902	Bulk WGS fastq files for germline and tumours in EGAS00001004572.	HiSeq X Ten	1
EGAD00001006906	Bulk GRIDSS somatic sv vcfs from tumour-normal analysis in EGAS00001004572		1
EGAD00001006907	Bulk Strelka somatic snv vcfs from tumour-normal analysis in EGAS00001004572		1
EGAD00001006908	Bulk copy number segments from Purple analysis in EGAS00001004572		1
EGAD00001006909	Bulk methylation tumour profiles from infinium methylation epic bead kit in EGAS00001004572		1
EGAD00001006910	Bulk Germline snv vcfs from haplotypecaller analysis in EGAS00001004572		1
EGAD00001008358	In vitro and in vivo drug screens of tumor cells identify novel therapies for high-risk child cancer	HiSeq X Ten NextSeq 500	1
EGAD00001010920	Transcriptome profiling of 121 high-risk paediatric cancer samples for identifying T-cell infiltration signatures using poly-A capture by Truseq and sequenced on NextSeq 500	Illumina NovaSeq 6000	240
EGAD00001015412	WGS, RNAseq, Methylation, variant calling analysis for a Novel paediatric case of a spinal high-grade astrocytoma with piloid features in a patient with Noonan Syndrome	Illumina NovaSeq 6000	3
EGAD00001015625	Samples not in other datasets for the paper titled; consHLA: a Next Generation Sequencing Consensus-based HLA Typing Workflow	Illumina NovaSeq 6000	8
EGAD00001016346	RNA sequencing paired fastqs (Illumina)	Illumina HiSeq 2500 Illumina HiSeq 4000 Illumina NovaSeq 6000 NextSeq 500	326
EGAD00001016412	Tumour WGS of rare and hard-to-diagnose pediatric tumors	Illumina HiSeq X Illumina NovaSeq 6000	97