Metastatic lobular EuroILC DAC

Dac ID Contact Person Email Access Information
EGAC00001001734 Christos Sotiriou christos [dot] sotiriou [at] bordet [dot] be No additional information is available

This DAC controls 1 dataset:

Dataset ID Description Technology Samples
EGAD00001006393 The dataset contains the targeted sequencing (TS) and the whole genome low pass (WGS) BAM files of the study. For the TS: Samples: TS_XXX There are normal and tumor DNA samples. Each DNA strand has been sequenced independently (PoolA and PoolB). A TruSeq Custom Amplicon panel of 20 genes frequently mutated in ILC and/or ER-positive BC in general was designed using DesignStudio from Illumina: AKT1, ARID1A, CDH1, ERBB2, ERBB3, ESR1, FOXA1, GATA3, IGF1R, JAK2, MAP2K4, MAP3K1, NF1, PIK3CA, PTEN, RB1, RUNX1, STAT3, TBX3, and, TP53. For the WGS: Samples: WGS_XXX There are normal and tumor DNA samples. Samples were sequenced to an average target coverage of 0.5X. Illumina HiSeq 4000,NextSeq 500 730