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Children's Cancer Therapy Institute DAC

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This DAC controls 15 datasets

Dataset ID	Description	Technology	Samples
EGAD00001006621	This dataset contains DNA sequencing data for twelve hepatoblastoma tumor samples, four of which have matched normals. Nine of the samples also have RNA sequencing data from the tumor sample. The dataset comprises six samples from patient tissues and six from cell lines; see metadata for details.	Illumina HiSeq 2500 Illumina HiSeq 4000	12
EGAD00001006622	This dataset comprises DNA sequencing for tumor and matched normal from an Alveolar Rhabdomyosarcoma patient. It also include RNA sequencing data from the tumor sample.	Illumina HiSeq 4000	1
EGAD00001007515	This dataset contains different samples from a single patient with SEF. The dataset contains whole genome, whole exome and RNAseq information. Two of the DNA sequencing samples also contain matched normals.	HiSeq X Ten Illumina HiSeq 2500 unspecified	6
EGAD00001007516	This dataset contains different samples from a single patient with SEF. The dataset contains whole genome, whole exome and RNAseq information. Two of the DNA sequencing samples also contain matched normals.	HiSeq X Ten Illumina HiSeq 2500 unspecified	6
EGAD00001007778	This dataset contains samples from 9 patients with alveolar rhabdomyosarcoma. 9 samples have whole exome data (one has multiple). 6 samples have RNAseq data (one has multiple). 6 samples have matched normals dna sequence data	Illumina HiSeq 2000	16
EGAD00001007939	This dataset contains samples from 9 patients with embryonal rhabdomyosarcoma. 9 samples have whole exome tumor data (one has multiple). 7 samples have tumor RNAseq data. 1 sample has matched normal dna sequence data	Illumina HiSeq 2000	10
EGAD00001008117	This dataset contains samples from 13 patients with osteosarcoma. 13 samples have whole exome tumor data. 12 samples have tumor RNAseq data. 3 samples have matched normal dna sequence data	Illumina HiSeq 2000	16
EGAD00001008282	This dataset contains samples from 5 patients with ewings sarcoma. 5 samples have whole exome tumor data. 1 sample has tumor RNAseq data. 4 samples have matched normal dna sequence data	Illumina HiSeq 2000	9
EGAD00001008283	This dataset contains samples from 5 patients with wilm's tumor. 5 samples have whole exome tumor data. 4 samples have tumor RNAseq data. 2 samples have matched normal dna sequence data	Illumina HiSeq 2000	7
EGAD00001008515	This deposit consists of DNA and RNA sequencing data from 32 EPS patients. 28 samples had tumor DNA sequencing data. 2 had matched normal sequencing data. 27 samples had tumor RNA sequencing data.	Illumina HiSeq 2000	32
EGAD00001008611	This deposit consists of DNA and RNA sequencing data from 67 CCS samples. 55 samples had tumor DNA sequencing data. 6 had matched normal sequencing data. 34 samples had tumor RNA sequencing data.	Illumina HiSeq 2000 Illumina HiSeq 4000	67
EGAD00001008974	This dataset contains DNA and RNA sequencing information for AML, Gliomas, brain tumors (medulloblastoma and ependymoma), DIPG, rhabdoid tumors and soft tissue sarcomas. In total 39 samples are present (14 matched normal, 25 tumor samples). Not all samples have matched normals and not all samples have RNA sequencing data..	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500	37
EGAD00001009736	This dataset contains RNA sequencing information for Chronic Myeloid Leukemia. In total 2 single-end RNA-seq tumor cell line samples are present.	Sequel	2
EGAD00001009973	Autopsy-derived, later snap-frozen tissue fragments from a 5-year-old female with recurrent metastatic fusion-negative embryonal rhabdomyosarcoma (RMS) primary tumor of the left thigh were analyzed. No quality matched tissue was available. Prior panel analysis identified 2 prominent genetic changes: NRAS Q61K, PIK3CA H1047R, CDKN2A/B loss, and ERBB3 overexpression.	Illumina HiSeq 2000	2
EGAD00001011100	This dataset contains samples from 8 patients with Sclerosing epithelioid fibrosarcoma. All 8 samples have whole exome tumor data and tumor RNAseq data. 3 samples also have matched normal dna sequence data.	Illumina HiSeq 2000	11