DAC

ChIP-seq of plasma cell-free nucleosomes identifies cell-of-origin gene expression programs

Dac ID Contact Person Email Access Information
EGAC00001001875 Nir Friedman nir [dot] friedman [at] mail [dot] huji [dot] ac [dot] il No additional information is available

This DAC controls 1 dataset:

Dataset ID Description Technology Samples
EGAD00001006811 Dataset includes cell-free ChIP-seq data of 268 samples (from 61 self-declared healthy donors, four patients with acute myocardial infarction, 29 patients suffering from autoimmune, metabolic, or viral liver diseases and 56 metastatic colorectal carcinoma (CRC) patients). DNA libraries preparation is documented in the methods section. Libraries were paired end sequenced by Illumina NextSeq 500 and aligned to the human genome (hg19) using bowtie2 (2.3.4.3) with ‘no-mixed’ and ‘no-discordant’ flags. This dataset includes fastq and BAM files of all samples. NextSeq 500 271