Prof. Dr. Markus Heim

Markus Heim
markus.heim@unibas.ch

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Dataset ID	Description	Technology	Samples
EGAD00001007820	RNAseq of liver organoids with a dG genotype (B20, nt115, U15) and with a TT genotype (nt5, U16, U19) was performed, which was used to study the impact of IFNλ4 on the cellular response to Sendai viral infection.	NextSeq 550	18
EGAD50000000060	We aimed to identify somatic mutations and transcriptional differences that could explain the resistance to Doxorubicin. This dataset includes RNA-Seq of HCC biopsies and Organoids and WES of Organoids.	Illumina HiSeq 2500 Illumina NovaSeq 6000 unspecified	52
EGAD50000001591	We conducted a nested case–control study within a prospective liver biopsy biobank at the University Hospital Basel. Patients with chronic hepatitis C (CHC) who developed hepatocellular carcinoma (HCC) during follow-up (index cases, CHC-HCC) were identified and 1:2 propensity score-matched to CHC controls without HCC (controls, CHC-nonHCC). Matching included clinical, demographic, and virological risk factors for HCC. Liver biopsies were analyzed using RNA and whole-exome sequencing.	Illumina HiSeq 2500 Illumina NovaSeq 6000	139