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COMBAT Consortium DAC

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COMBAT DAC
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This DAC controls 14 datasets

Dataset ID	Description	Technology	Samples
EGAD00001007931	Anonymised patient metadata and associated data dictionary. For further information regarding this dataset, please contact Alexander Mentzer at contact@combat.ox.ac.uk.		1
EGAD00001007932	SmartSeq2 RNAseq data from 16 samples. For further information regarding this dataset, please contact Julian Knight and Alexander Mentzer at contact@combat.ox.ac.uk.	NextSeq 500	16
EGAD00001007957	Bulk RNAseq data from whole blood. For further information regarding this dataset, please contact Katie Burnham and Andew Kwok at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	142
EGAD00001007959	gVCF file per patient obtained from the bulk/mini-bulk RNAseq data. For further information regarding this dataset, please contact Stephen Sansom and Alexander Mentzer at contact@combat.ox.ac.uk.		1
EGAD00001007960	fastq and filtered fasta files for B-cell receptor sequencing. For further information regarding this dataset, please contact Rachael Bashford-Rogers at contact@combat.ox.ac.uk.	Illumina MiSeq	20
EGAD00001007961	fastq and filtered fasta files for T-cell receptor sequencing. For further information regarding this dataset, please contact Rachael Bashford-Rogers at contact@combat.ox.ac.uk.	Illumina MiSeq	14
EGAD00001007962	Raw Illumina sequencing data and CellRanger BAM output files. For further information regarding this dataset, please contact Stephen Sansom at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	10
EGAD00001007963	Raw Illumina sequencing data from single-cell ATACSeq experiments. For further information regarding this dataset, please contact Julian Knight and Tatjana Sauka-Spengler at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	1
EGAD00001007964	Raw Illumina sequencing data. For further information regarding this dataset, please contact Rachael Bashford-Rogers at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	10
EGAD00001007965	Raw Illumina sequencing data. For further information regarding this dataset, please contact Benjamin Fairfax and Rachael Bashford-Rogers at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	10
EGAD00001008007	Raw Illumina sequencing data and CellRanger BAM output files. For further information regarding this dataset, please contact Stephen Sansom at contact@combat.ox.ac.uk.	Illumina NovaSeq 6000	1
EGAD00001008008	Linker file for COMBAT CITEseq sequencing data. Links COMBAT sample IDs with sequencing pools and their associated raw sequence data. Sequence data can be found in the following datasets: ADT data: EGAD00001007962 GEX data: EGAD00001008007 VDJ (B-cell): EGAD00001007964 VDJ (T-cell): EGAD00001007965		1
EGAD00001008009	Other raw and processed phenotype data generated by the COMBAT consortium.		1
EGAD00010002868	Genome-wide germline genotype data for 730059 SNPs from 144 individuals recruited across COVID-19, sepsis, and healthy volunteer cohorts at Oxford University Hospitals NHS Foundation Trust. DNA was extracted from whole blood (COVID-19 and acute sepsis) or buffy coat (healthy volunteers and non-acute sepsis patients) samples and genotyped using the Illumina Infinium Global Screening Array (v3). Genotypes were called using GenomeStudio v2.0.4 The dataset consists of pre-QC genotype data in PLINK binary format (.bed/.bim/.fam) prior to QC and imputation.	Illumina Infinium Global Screening Array (version 3)	144