Need Help?

DAC for the study EGAS00001005773

Contact Information

Nikoleta Juretic
nikoleta.juretic@affiliate.mcgill.ca

Request Access

This DAC controls 6 datasets

Dataset ID	Description	Technology	Samples
EGAD00001008347	We profiled 4 high-grade gliomas patient brain tumor samples by single-cell ATAC-seq using the 10X Chromium 3' technology. The raw fastq and index files are provided.	Illumina NovaSeq 6000	4
EGAD00001008348	We profiled 9 high-grade gliomas patient tumor samples by bulk RNA-seq. The raw fastqs are provided.	Illumina HiSeq 2000 Illumina HiSeq 4000 Illumina NovaSeq 6000 unspecified	9
EGAD00001008349	We profile 10 high-grade gliomas patient brain tumor samples by single-cell multiome ATAC + gene expression, using the 10X Chromium technology. 3 sets of fastq are provided for each samples: R1 and R2 for gene expression, R1 and R2 for ATAC-seq as well as index1 and index2 for ATAC-seq.	Illumina NovaSeq 6000	10
EGAD00001008350	We profiled 15 patient brain tumor samples by ChIP-seq. Inputs are provided for 16 samples, H3K27ac is provided for 15 samples, H3K27me3 is provided for 10 samples and H3K27me3 is provided for 5 samples. The raw bam files are provided.	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000 Illumina NovaSeq 6000	52
EGAD00001008351	We profiled 7 high-grade gliomas patient brain tumor samples by single-cell RNA-seq and 18 single-nuclei RNA-seq using 10X Chromium 3' techonology. The raw fastq files are provided.	Illumina HiSeq 4000 Illumina NovaSeq 6000	25
EGAD00001009050	This dataset contains 2 human tumor-derived cell lines and 1 human tumor Hi-C samples. The raw fastq files and the processed .hic file is provided for each sample.	HiSeq X Ten Illumina HiSeq 2500	3