Netherlands Cancer Institute - Breast Cancer Neoadjuvant chemotherapy biomarker studies

Esther E Lips
e.lips@nki.nl

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Dataset ID	Description	Technology	Samples
EGAD00001008421	This dataset contains RNAseq data of 20 paired pre-post neoadjuvant chemotherapy breast cancer samples. In total the set contains n=20 biopsies, n=20 surgery specimens. Each sample has 2 fastq files, so n=80 fastq files are uploaded in total.	Illumina HiSeq 2000	40
EGAD00001008433	This dataset contains RNAseq data of n=87 pre-treatment biopsies of triple negative and luminal- type breast cancer patients, all scheduled to receive neoadjuvant chemotherapy. Gene expression data is linked with treatment response and survival.	Illumina HiSeq 2000	1
EGAD00001008442	This dataset contains whole exome sequencing data (WES) of 20 paired pre- and post neoadjuvant chemotherapy breast cancer samples. From every patient a pre-treatment biopsy (B) and a post-treatment surgery (S) specimen has been sequenced. From most patients a paired normal blood sample (N) has been sequenced as a reference control.	Illumina HiSeq 2500	1