Malmstrom lab, Division of Rheumatology, Karolinska Institutet

Dac ID Contact Person Email Access Information
EGAC00001002777 Uta Hardt uta [dot] hardt [at] ki [dot] se No additional information is available

This DAC controls 1 dataset:

Dataset ID Description Technology Samples
EGAD00001009076 This dataset includes 3432 paired single cell sequencing fastq files derived from synovial B cells of 5 early Rheumatoid Arthritis patients. Libraries were prepared using the SmartSeq2 protocol. All wells contained ERCC spike-ins. Libraries were sequenced on an Illumina NovaSeq instrument with 2x100bp paired-end reads yielding a median of 2.5M reads/well. Sample aliases ending on 368 and 384 represent empty control wells. Sample aliases starting with P11417_4 and P13157_1 belong to ACPA- patient A7, sample aliases starting with P11417_5 and P11417_6 belong to ACPA+ patient A1, sample aliases starting with P13157_2 belong to ACPA- patient A3, sample aliases starting with P13157_3 and P13157_6 belong to ACPA+ patient A2, sample aliases starting with P13157_4 and P13157_5 belong to ACPA- patient A4. Illumina NovaSeq 6000 3432