Linked-Read Medulloblastoma DAC

Craig Daniels
craig.daniels@sickkids.ca

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Dataset ID	Description	Technology	Samples
EGAD00001010849	Linked-read data from 25 medulloblastomas and their matching control. Dataset consists of 25 group 4 medulloblastomas (G4) as well as 2 sonic hedgehog medulloblastomas (SHH-MB) samples and 2 group 3 medulloblastomas. The data consists of BAM files generated by the LongRanger pipeline developed by 10x Genomics	HiSeq X Ten Illumina NovaSeq 6000	50
EGAD00001010850	RNA-Seq data from 12 medulloblastoma samples, all group 4 medulloblastomas. The data consists of BAM files aligned using STAR	unspecified	12
EGAD00001010851	Nanopore data from 3 medulloblastoma samples of which 2 are tumor-normal pairs sequenced with the MinIon and one is tumor only data sequenced on the PromethIon. The data consists of BAM files aligned using minimap2	MinION PromethION	5
EGAD00001010852	PacBio data from 5 medulloblastoma tumor-normal pairs. The data consists of BAM files aligned using NGMLR	unspecified	10