UTHSCSA HCC Team Data Access Commitee

Luzhe Sun
sunl@uthscsa.edu

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Dataset ID	Description	Technology	Samples
EGAD00001011158	The paired-end reads were aligned to the human reference genome (hg19) with decoy sequences (as used in the 1000 Genomes Project) using BWA (v0.7.5a) software. The duplicate reads were marked and subsequently removed using Picard (v1.140) (https://broadinstitute.github.io/picard/) and SAMtools (v0.1.19), respectively. Local realignment around insertions/deletions (indels) and base quality recalibration were performed using GATK (v3.6).	Illumina HiSeq 3000	54