The data access committee for "Validation of cfDNA fragmentome analyses for early detection of liver cancer"

Dr Shashikant Koul
skoul3@jh.edu

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Dataset ID	Description	Technology	Samples
EGAD00001015538	The dataset for “Validation of cfDNA fragmentome analyses for early detection of liver cancer” includes 380 cram files from whole genome next-generation sequencing on the Illumina NovaSeq 6000 with 10x coverage. The samples analyzed include plasma samples from patients with cancer and liver disease.	Illumina NovaSeq 6000	380
EGAD00001015823	The dataset includes 63 BAM files from Oxford Nanopore PromethION whole-genome sequencing, generated by base calling POD5 files with Dorado (super-accurate, modified base model v5.0.0_5mCG_5hmCG@v3) and aligning reads to the hg19 reference genome.	PromethION	4