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DAC for TFHL single-cell analysis project at Department of Hematology, University of Tsukuba

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Sakurako Suma
suma.sakurako.gt@un.tsukuba.ac.jp

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This DAC controls 12 datasets

Dataset ID	Description	Technology	Samples
EGAD50000000400	This dataset contains single-cell BCR sequencing data generated by the Cellranger pipeline (v3.1.0, 10X Genomics) from 5 LN and 1 PB samples of 5 patients with T follicular helper cell lymphomas (TFHLs) as well as 7 homeostatic LN (HLN) samples.		13
EGAD50000000401	This dataset contains WES data analyzed using the Genomon2 pipeline (v.2.6.2, https://github.com/Genomon-Project) from 14 patients with T follicular helper cell lymphomas (TFHLs). A list of somatic mutations called by the Genomon2 pipeline for each sample is provided as a txt file.		32
EGAD50000000402	This dataset contains single-cell count data generated by the Cellranger pipeline (v3.1.0, 10X Genomics) from 9 LN and 16 PB samples of 14 patients with T follicular helper cell lymphomas (TFHLs) as well as 7 homeostatic LN (HLN) samples.		32
EGAD50000000403	This dataset contains single-cell TCR sequencing data generated by the Cellranger pipeline (v3.1.0, 10X Genomics) from 9 LN and 16 PB samples of 14 patients with T follicular helper cell lymphomas (TFHLs) as well as 7 homeostatic LN (HLN) samples.		32
EGAD50000001763	This dataset contains single-cell count data generated using the Cell Ranger pipeline (v3.1.0, 10x Genomics) from 22 peripheral blood (PB) samples collected from 11 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	22
EGAD50000001764	This dataset contains single-cell TCR sequencing data from 22 peripheral blood (PB) samples collected from 11 patients with nodal T follicular helper cell lymphomas (TFHLs), generated using the Cell Ranger pipeline (v3.1.0, 10x Genomics) as part of a phase 2 trial of dasatinib.	HiSeq X Ten	22
EGAD50000001765	This dataset contains WES data from tumor tissues of 14 patients with T follicular helper cell lymphomas (TFHLs), analyzed using the Genomon2 pipeline (v2.6.2, https://github.com/Genomon-Project) as part of a phase 2 trial of dasatinib. A list of somatic mutations identified by the Genomon2 pipeline for each sample is provided in a text file.	HiSeq X Ten	14
EGAD50000002402	This dataset contains snRNA-seq count data generated using the Cell Ranger pipeline (v10.0.0, 10x Genomics) from 4 tumor tissue samples collected from 4 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	4
EGAD50000002989	This dataset contains bulk RNA-seq data from 13 tumor tissue samples collected from 13 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	13
EGAD50000002990	This dataset contains scTCR-seq data from 22 peripheral blood samples collected from 11 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	22
EGAD50000002991	This dataset contains snRNA-seq data from 4 tumor tissue samples collected from 4 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	4
EGAD50000002992	This dataset contains scRNA-seq data from 22 peripheral blood samples collected from 11 patients with nodal T follicular helper cell lymphomas (TFHLs) enrolled in a phase 2 trial of dasatinib.	HiSeq X Ten	22