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JKLab, SNU College of Medicine

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Dr Jin-Ku Lee
jinkulee@snu.ac.kr

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This DAC controls 4 datasets

Dataset ID	Description	Technology	Samples
EGAD50000000613	Tissue samples were collected from 18 ovarian cancer patients. After mechanical and enzymatic dissociation, a part of these tissues underwent growth factoromics analysis. For four cases, single-cell sequencing analysis was conducted under conditions with or without estradiol. Additionally, the remains of the tissues were frozen and subsequently subjected to bulk RNA-sequencing on 17 of these samples. Sixteen cases were diagnosed as HGSOC, while two samples were clear cell or mucinous type (Extended Data Table 1). All cases were grade 3, and none had received neoadjuvant chemotherapy. - Group C1, Epithelial Ovarian Cancer(EOC) patients with estrogen responsiveness : 6 samples - Group C2, Epithelial Ovarian Cancer(EOC) patients with estrogen non-responsiveness : 10 samples - non-classified 1-sample	Illumina HiSeq 4000 Illumina NovaSeq X	17
EGAD50000002057	Tissue samples were collected from 18 ovarian cancer patients. After mechanical and enzymatic dissociation, a part of these tissues underwent growth factoromics analysis. For four cases, single-cell sequencing analysis was conducted under conditions with or without estradiol. Additionally, the remains of the tissues were frozen and subsequently subjected to exome sequencing on 16 of these samples. Sixteen cases were diagnosed as HGSOC, while two samples were clear cell or mucinous type (Extended Data Table 1). All cases were grade 3, and none had received neoadjuvant chemotherapy.	Illumina NovaSeq 6000 Illumina NovaSeq X	25
EGAD50000002058	scRNAseq of ovarian cancer patient derived organoids with or without estradiol	unspecified	3
EGAD50000002059	bulkRNAseq of four ovarian cancer cell lines (PA-1, A2780, A2780/CP20, TOV-21G)	unspecified	5