CEDAR DataSets

Dr Souad Rahmouni
srahmouni@uliege.be

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Dataset ID	Description	Technology	Samples
EGAD50000001003	Single-cell RNA sequencing data of human intestine in three anatomical locations (terminal ileum, transverse colon, rectum) collected from 60 healthy donors using 10X Genomics 3' GEM kit.	Illumina NovaSeq 6000 NextSeq 500	60
EGAD50000002020	Fixed single cell RNA-seq of terminal ileum (IL), transverse colon (TC), rectum (RE), leukocytes (BL) collected from a healthy donor. The biopsies were firstly fixed with 4% formaldehyde to preserve fragile cell populations like epithelial cells and neutrophils. Transcriptome was obtained using a probe hybridization to detect 18,099 human mRNA. Single cell transcriptome information from 6,948 (IL), 4,448 (TC), 5,271 (RE) and 6,883 (BL) cells were analyzed using a Seurat software (https://satijalab.org/seurat/).	Illumina NovaSeq 6000	1