Small Intestine Adenocarcinoma Subtyping Data Access Committee

Dr Kristiaan J Lenos
k.j.lenos@amsterdamumc.nl

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Dataset ID	Description	Technology	Samples
EGAD50000001760	Associated with Molecular classification of small intestinal adenocarcinomas. Shallow Whole Genome Sequencing (sWGS) generated 214 .fastq files from 127 small intestine adenocarcinomas from 125 patients. DNA libraries for shallow whole genome sequencing were prepared using TruSeq Nano kits (Illumina).	Illumina NovaSeq 6000	127
EGAD50000001761	Associated with Molecular classification of small intestinal adenocarcinomas. TSO500 Targetted sequencing panel generated 292 .fastq files from 145 samples (primary and recurrent small intestine adenocarcinomas as well as normal samples) from 133 patients. TruSight Oncology 500 (TSO500; Illumina, San Diego, USA) high-throughput assays were run on genomic DNA samples through next-generation sequencing (NGS) on Illumina’s NovaSeq6000 at GenomeScan.	Illumina NovaSeq 6000	145
EGAD50000001762	Associated with Molecular classification of small intestinal adenocarcinomas. RNA sequencing generated 849 .fastq files from 137 primary and recurrent small intestine adenocarcinoma samples from 135 patients.	Illumina NovaSeq 6000	137