Khoe-San genome Project (KSGP)

Dr Vanessa M. Hayes
vanessa.hayes@sydney.edu.au

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Dataset ID	Description	Technology	Samples
EGAD50000002043	The dataset contains BAM files of whole genome sequencing data of African Khoe-San population (n=169, 30X coverage). DNA extracted from blood underwent 2 × 150 bp sequencing on the Illumina HiSeq X instrument (Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research). Raw sequencing reads were aligned against human reference hg38 including alternative contigs using bwa (v.0.7.15). The Genome Analysis Toolkit (GATK, v.3.5-0) was used for duplicate marking, indel realignment and base quality recalibration.	HiSeq X Ten	169