CHUM HNSCC biobank

Dr Apostolos Christopoulos
a.christopoulos@umontreal.ca

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Dataset ID	Description	Technology	Samples
EGAD50000002608	We conducted a retrospective, single-center Canadian cohort study of patients who underwent primary surgery for OSCC between 2010 and 2024. Nucleic acid quality was assessed using the 4150 TapeStation System (Agilent) prior to library preparation. WGS was performed on germline DNA, following Genome Analysis Toolkit’s (GATK) Best Practices and procedures, with a target of 30X deduplicated coverage per sample, using an Illumina NovaSeq 6000 instrument.	Illumina NovaSeq 6000	160