Colorectal Cancer, NDS Oxford

Dr Simon Buczacki
simon.buczacki@nds.ox.ac.uk

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Dataset ID	Description	Technology	Samples
EGAD50000002824	Includes 10 unique sample types: wild-type ('WT'), CRISPR-edited: 'F', 'A', 'FA', 'AF', 'AT', 'ATF' and AAVS1, and co-cultured samples: 'F_CoCult' and 'WT_CoCult'. Each sample has 3 replicates. So in total 30 samples	NextSeq 500	30
EGAD50000002825	ATAC-seq carried out in two batches, each with its own matched wild-type ('WT') Batch 1 - 'FA' (FBXW7 followed by APC mut.), 'AF' and 'WT' [3x replicates each] Batch 2 - 'F' and 'A' [3x replicates each], and 'WT', pcw17 and pcw21 foetal [2x replicates each]	NextSeq 2000	30
EGAD50000002826	Single-cell sorted 10xGenomics libraries were sequenced using the 5'-end chemistry. 'F' mutant and 'WT' organoids had 2x replicates each.	NextSeq 2000	4