Search Results - EGA European Genome-Phenome Archive

Molecular programs of melanoma brain metastases (MBM)

We performed paired-end whole transcriptome sequencing of fresh frozen or intraoperative brain metastases of therapeutically treated stage IV melanoma patients. In addition, we analysed the epigenetic landscape of tumors usind Illumina 850k bead chip technology.

Study EGAS00001005976

COIN CRC GWAS data

Genotype data from the COIN and COIN-B trials of advanced/metastatic colorectal cancer. Data provided in plink format, and has been quality controlled. Control data used was from the WTCCC2 project National Blood Donors (NBS) Cohort (EGAD00000000024).

Study EGAS00001005421

NLG-LBC-05 ctDNA

Correlative analysis of circulating tumor DNA (ctDNA) in aggressive large B-cell lymphoma patients treated in NLG-LBC-05 phase II trial. Whole genome and targeted sequencing was applied to longitudinal plasma cell-free DNA and diagnostic tumor tissues.

Study EGAS00001005835

Dedifferentiated_Melanoma

De- and transdifferentiation of melanoma is a rare histopathological phenomenon that has not be characterised genetically. In this project we plan to sequence the genomes of de and transdifferentiated cases so as to define their genetic make-up.

Study EGAS00001003471

RNAseq of liver harvested from CDAHFD mice treated for 8 weeks with either the MGAT2 inhibitor compound BMS-963272 or vehicle

This experiment consists of RNAseq of liver harvested from CDAHFD mice treated for 8 weeks with either the MGAT2 inhibitor compound BMS-963272 (N = 10) or with vehicle (N = 10).

Study EGAS00001006583

Comprehensive de novo variant discovery with HiFi long-read sequencing

We performed whole-genome sequencing of 8 trios with intellectual disability using Pacbio HiFi long-reads. We then called variants with PBSV and Deepvariant. We filtered for high-quality de novo variants and validated them.

Study EGAS00001006479

HCA_Thymus_Paediatric_ThyDesign_RNA_Managed_Access

T cells are central to adaptive immunity and thus crucial for understanding and treating human disease. While extensively studied in model organisms, translating this knowledge to humans can sometimes be limited by their rapid cross-species evolution and diverse

Study EGAS00001007687

14321 results for ""Pennsylvania+German"+ACS+study+'Socius'+open+access"

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Molecular programs of melanoma brain metastases (MBM)

COIN CRC GWAS data

NLG-LBC-05 ctDNA

Dedifferentiated_Melanoma

RNAseq of liver harvested from CDAHFD mice treated for 8 weeks with either the MGAT2 inhibitor compound BMS-963272 or vehicle

Comprehensive de novo variant discovery with HiFi long-read sequencing

HCA_Thymus_Paediatric_ThyDesign_RNA_Managed_Access

Genome and transcriptome sequence data from a GI primary (prev breast cancer) patient

Genome and transcriptome sequence data from a metastatic fibrolamellar hepatocelluar carcinoma patient

Genome and transcriptome sequence data from a metastatic rectosigmoid adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic carcinoma of the lung patient

Genome and transcriptome sequence data from a adenocarcinoma of the lung patient

Genome and transcriptome sequence data from a metastatic colorectal cancer patient

Genome and transcriptome sequence data from a metastatic carcinoma of primary unknown patient

Genome and transcriptome sequence data from a carcinosarcoma of the uterus patient

Genome and transcriptome sequence data from a metastatic colorectal cancer patient

Genome and transcriptome sequence data from a serous carcinoma of fallopian tube patient

Genome and transcriptome sequence data from a metastatic adult granulosa cell tumour patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the lung patient

Genome and transcriptome sequence data from a metastatic medullary thyroid cancer patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the rectum patient

Genome and transcriptome sequence data from a metastatic colon cancer patient

Genome and transcriptome sequence data from a metastatic clear cell sarcoma patient

Genome and transcriptome sequence data from a low grade serous ovarian cancer patient

Genome and transcriptome sequence data from a metastatic colorectal cancer patient