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14441 results for ""Pennsylvania+German"+ACS+study+'Socius'+open+access"

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General Study Dataset

Type

blog dac dataset documentation study

Repository

dbgap ega jga

Federated ega

finland norway poland spain sweden

Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection community control set controlled trial copy number variation (cnv) cross-sectional double-blind electronic medical records epigenetics eqtl exome sequencing extended pedigrees family family linkage forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression genotype/expression array gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development mixed multicenter multiplex families nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized phase iii placebo-controlled pooled clone sequencing population population genomics population-based control set probands prospective quantitative cross-sectional randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing sibling cohort single cell analysis single cell rna sequence single cell rna sequencing single patient snp array analysis stem cell lines synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

ab 3730xl genetic analyzer ab 5500xl genetic analyzer ab solid 4 system affy mirna 3.0 array affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 array affymetrix 6.0; cytoscan affymetrix axiom genome-wide asi 1 array affymetrix axiom genome-wide human origins array affymetrix biobank array affymetrix oncoscan ffpe express affymetrix, thermo fisher scientific agilent human mirna microarray axiom uk biobank array bgiseq-500 clariomâ„¢ d human assay complete genomics coreexome illumina snp chip array dnbseq-g400 dnbseq-t7 epic beadchip hiseq x five hiseq x ten human cardio metabochip human clariom d arrays human genome u219 array plate humanht-12 illumina (epic array) illumina 450k illumina cardio-metabochip illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array illumina gsa v1.0 illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina human omni1-quad beadchip. illumina humancoreexome beadchip array illumina humancoreexome-12v1-1_a illumina humancoreexome-24v1-0 illumina humancoreexome-24v1-1 illumina humanmethylation450 illumina humanomni1-quad_v1-0 illumina humanomni1-quad_v1-0, humanomniexpress-12-v1-0, humanomniexpress-24-v1-1, humanomni25-8v1-2_a1 illumina humanomni2.5 illumina humanomni2.5-8 illumina humanomni5-quad and exome sequencing illumina humanomniexpress-12 illumina humanomniexpress-12-v1-0 illumina humanomniexpress-24-v1-1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium epic illumina infinium h3africa (v2) with custom add-ons illumina infinium immunochip illumina infiniumomniexpressexome-8 illumina mega array illumina methylationepic v2.0 illumina miniseq illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni 2.5 illumina omni 2.5m illumina oncoarray illumina sangerddd_omniexplusv1_15019773 infinium gsa infinium methylationepic array ion genestudio s5 ion torrent pgm ion torrent proton ion torrent s5 xl llumina 2.5-8 minion nextseq 2000 nextseq 500 nextseq 550 nimblegen hg18 cgh 385k omniexpress omniexpress-24 v1.1 pacbio rs ii promethion qexactive plus sanger sequencing sequel sequel ii sequel iie sequenom massarray (agena bioscience) somascan 1.3k proteomic assay uk biobank axiomâ„¢ array unspecified

Phenotypes

[CHEBI:33699] [CL:0000037] [CL:0000084] [CL:0000094] [CL:0000235] [CL:0000576] [CL:0000837] [CL:0000863] [CL:0000890] [CL:0002057] [EFO:0000094] [EFO:0000198] [EFO:0000209] [EFO:0000211] [EFO:0000220] [EFO:0000222] [EFO:0000272] [EFO:0000275] [EFO:0000280] [EFO:0000285] [EFO:0000309] [EFO:0000322] [EFO:0000330] [EFO:0000339] [EFO:0000349] [EFO:0000403] [EFO:0000478] [EFO:0000503] [EFO:0000519] [EFO:0000565] [EFO:0000574] [EFO:0000586] [EFO:0000609] [EFO:0000632] [EFO:0000637] [EFO:0000693] [EFO:0000980] [EFO:0001461] [EFO:0001663] [EFO:0001905] [EFO:0002001] [EFO:0002002] [EFO:0002422] [EFO:0002499] [EFO:0002508] [EFO:0002539] [EFO:0002759] [EFO:0002939] [EFO:0002966] [EFO:0003025] [EFO:0003094] [EFO:0003885] [EFO:0003897] [EFO:0003940] [EFO:0004281] [EFO:0005023] [EFO:0005543] [EFO:0005699] [EFO:0005704] [EFO:0005705] [EFO:0005706] [EFO:0005707] [EFO:0005708] [EFO:0005709] [EFO:0005710] [EFO:0005711] [EFO:0005712] [EFO:0005740] [EFO:0005922] [EFO:0006545] [EFO:0009119] [EFO:0009121] [EFO:0009443] [EFO:0010064] [EFO:1000028] [EFO:1000042] [EFO:1000068] [EFO:1000069] [EFO:1000177] [EFO:1000180] [EFO:1000231] [EFO:1000238] [EFO:1000327] [EFO:1000490] [EFO:1000575] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001956] [EFO:1001958] [EFO:1002008] [HP:0000001] [HP:0000002] [HP:0000008] [HP:0000009] [HP:0000010] [HP:0000014] [HP:0000020] [HP:0000022] [HP:0000023] [HP:0000028] [HP:0000032] [HP:0000035] [HP:0000036] [HP:0000045] [HP:0000047] [HP:0000049] [HP:0000062] [HP:0000069] [HP:0000073] [HP:0000076] [HP:0000077] [HP:0000078] [HP:0000079] [HP:0000085] [HP:0000086] [HP:0000089] [HP:0000098] [HP:0000100] [HP:0000104] [HP:0000107] [HP:0000110] [HP:0000118] [HP:0000119] [HP:0000121] [HP:0000122] [HP:0000125] [HP:0000126] [HP:0000137] [HP:0000138] [HP:0000152] [HP:0000153] [HP:0000154] [HP:0000157] [HP:0000159] [HP:0000160] [HP:0000161] [HP:0000162] [HP:0000163] [HP:0000164] [HP:0000168] [HP:0000172] [HP:0000174] [HP:0000175] [HP:0000176] [HP:0000177] [HP:0000178] [HP:0000179] [HP:0000185] [HP:0000193] [HP:0000194] [HP:0000201] [HP:0000202] [HP:0000212] [HP:0000215] [HP:0000218] [HP:0000219] [HP:0000220] [HP:0000233] [HP:0000234] [HP:0000235] [HP:0000236] [HP:0000238] [HP:0000239] [HP:0000240] [HP:0000243] [HP:0000248] [HP:0000252] [HP:0000253] [HP:0000256] [HP:0000260] [HP:0000268] [HP:0000270] [HP:0000271] [HP:0000272] [HP:0000276] [HP:0000277] [HP:0000278] [HP:0000280] [HP:0000284] [HP:0000286] [HP:0000288] [HP:0000290] [HP:0000294] [HP:0000301] [HP:0000303] [HP:0000306] [HP:0000307] [HP:0000308] [HP:0000309] [HP:0000311] [HP:0000315] [HP:0000316] [HP:0000319] [HP:0000324] [HP:0000325] [HP:0000326] [HP:0000327] [HP:0000331] [HP:0000337] [HP:0000338] [HP:0000340] [HP:0000341] [HP:0000343] [HP:0000347] [HP:0000356] [HP:0000357] [HP:0000358] [HP:0000359] [HP:0000363] [HP:0000364] [HP:0000365] [HP:0000366] [HP:0000368] [HP:0000369] [HP:0000370] [HP:0000377] [HP:0000378] [HP:0000383] [HP:0000384] [HP:0000388] [HP:0000396] [HP:0000403] 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[HP:0001667] [HP:0001671] [HP:0001674] [HP:0001679] [HP:0001680] [HP:0001684] [HP:0001691] [HP:0001692] [HP:0001707] [HP:0001710] [HP:0001711] [HP:0001713] [HP:0001714] [HP:0001719] [HP:0001738] [HP:0001757] [HP:0001760] [HP:0001762] [HP:0001763] [HP:0001769] [HP:0001770] [HP:0001772] [HP:0001773] [HP:0001776] [HP:0001780] [HP:0001782] [HP:0001790] [HP:0001791] [HP:0001792] [HP:0001800] [HP:0001814] [HP:0001824] [HP:0001829] [HP:0001830] [HP:0001831] [HP:0001832] [HP:0001837] [HP:0001838] [HP:0001839] [HP:0001841] [HP:0001844] [HP:0001845] [HP:0001848] [HP:0001850] [HP:0001863] [HP:0001864] [HP:0001868] [HP:0001871] [HP:0001872] [HP:0001873] [HP:0001877] [HP:0001878] [HP:0001883] [HP:0001892] [HP:0001903] [HP:0001920] [HP:0001933] [HP:0001939] [HP:0001941] [HP:0001943] [HP:0001945] [HP:0001954] [HP:0001955] [HP:0001956] [HP:0001961] [HP:0001965] [HP:0001999] [HP:0002002] [HP:0002006] [HP:0002007] [HP:0002011] [HP:0002012] [HP:0002013] [HP:0002015] [HP:0002017] [HP:0002019] [HP:0002020] 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[HP:0002943] [HP:0002944] [HP:0002949] [HP:0002967] [HP:0002974] [HP:0002977] [HP:0002979] [HP:0002981] [HP:0002991] [HP:0003011] [HP:0003019] [HP:0003026] [HP:0003028] [HP:0003038] [HP:0003043] [HP:0003072] [HP:0003074] [HP:0003111] [HP:0003117] [HP:0003121] [HP:0003128] [HP:0003186] [HP:0003189] [HP:0003196] [HP:0003201] [HP:0003202] [HP:0003271] [HP:0003272] [HP:0003312] [HP:0003316] [HP:0003319] [HP:0003330] [HP:0003336] [HP:0003366] [HP:0003368] [HP:0003393] [HP:0003422] [HP:0003468] [HP:0003498] [HP:0003502] [HP:0003508] [HP:0003510] [HP:0003549] [HP:0003693] [HP:0003763] [HP:0003781] [HP:0003808] [HP:0003839] [HP:0004050] [HP:0004097] [HP:0004099] [HP:0004207] [HP:0004209] [HP:0004233] [HP:0004275] [HP:0004279] [HP:0004297] [HP:0004298] [HP:0004299] [HP:0004305] [HP:0004322] [HP:0004323] [HP:0004324] [HP:0004325] [HP:0004328] [HP:0004329] [HP:0004348] [HP:0004349] [HP:0004360] [HP:0004363] [HP:0004370] [HP:0004372] [HP:0004375] [HP:0004378] [HP:0004383] [HP:0004384] [HP:0004386] 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Genome and transcriptome sequence data from a progressive facial plexiform neurofibroma tumor patient

Genome and transcriptome sequence data from a progressive facial plexiform neurofibroma patient, generated as part of the BC Cancer Agency's Pediatric Personalized Onco-Genomics study
Dataset EGAD00001015282
H3Africa H3AChipDesign NEEDI

50 samples from Mali generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004334
H3Africa H3AChipDesign CAfGEN

48 samples from Botswana generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004533
H3Africa H3AChipDesign ELSI

24 samples from Cameroon generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004316
H3Africa H3AChipDesign ACCME

49 samples from Nigeria generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004505
MGA-NUTM1 fusion in high grade spindle cell sarcoma Data

There is a total of 4 sample data (2 WGS and 2 RNAseq) belong to 2 patient deposited in this study.
Dataset EGAD00001004479
H3Africa H3AChipDesign TrypanoGEN2

41 samples from Zambia generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004220
H3Africa H3AChipDesign TrypanoGEN1

26 samples from Cameroon generated for the H3Africa Chip Design Study. The dataset includes BAM, FASTQ and decompressed gVCF files.
Dataset EGAD00001004393
GenomeDenmark Phase 2 - HLA validation sequencing data

Validation of HLA variation of 8 individuals from the GenomeDenmark Phase 2 study. Validation is performed Sanger sequencing of selected amplicons (5-10 amplicons per sample).
Dataset EGAD00001003454
FFPE_normals_v2_gbm_wtsi_panel (2018-06-06)

Targeted pulldown of approx 60 ffpe normal samples to use as normal controls . This dataset contains all the data available for this study on 2018-06-06.
Dataset EGAD00001004152

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