Matched_breast_cancer_fusion_gene_study
Genomic libraries (500 bps) will be generated from total genomic DNA derived from 40 breast cancer samples and subjected to total of eight lanes of 37 bp, paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information, and the identification of novel rearranged cancer genes and gene fusions.
- Type: Cancer Genomics
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001000097 | Illumina Genome Analyzer II Illumina HiSeq 2000 | 46 | |
EGAD00001000138 | Illumina Genome Analyzer II Illumina HiSeq 2000 | 58 | |
EGAD00001001335 | Illumina Genome Analyzer II Illumina HiSeq 2000 | - | |
EGAD00001001338 | Illumina Genome Analyzer II Illumina HiSeq 2000 | - | |
EGAD00001002237 | Illumina Genome Analyzer II Illumina HiSeq 2000 | 59 |
Publications | Citations |
---|---|
The life history of 21 breast cancers.
Cell 149: 2012 994-1007 |
883 |
Mutational processes molding the genomes of 21 breast cancers.
Cell 149: 2012 979-993 |
1245 |
THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data.
Genome Biol 14: 2013 R80 |
127 |
Towards accurate characterization of clonal heterogeneity based on structural variation.
BMC Bioinformatics 15: 2014 299 |
7 |
Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer.
Cell Rep 16: 2016 2032-2046 |
30 |
Accurate Identification of Subclones in Tumor Genomes.
Mol Biol Evol 39: 2022 msac136 |
8 |
ERα-associated translocations underlie oncogene amplifications in breast cancer.
Nature 618: 2023 1024-1032 |
30 |