Study

UK10K_RARE_FIND

Study ID Alternative Stable ID Type
EGAS00001000128 Other

Study Description

In the UK10K project we propose a series of complementary genetic approaches to find new low frequency/rare variants contributing to disease phenotypes. These will be based on obtaining the genome wide sequence of 4000 samples from the TwinsUK and ALSPAC cohorts (at 6x sequence coverage), and the exome sequence (protein coding regions and related conserved sequence) of 6000 samples selected for extreme phenotypes. Our studies will focus primarily on cardiovascular-related quantitative traits, obesity and related metabolic traits, neurodevelopmental disorders and a limited number of extreme clinical phenotypes that will provide proof-of-concept for future familial trait sequencing. We will analyse directly quantitative traits in the cohorts and the selected traits in the extreme samples, and also use imputation down to 0.1% allele frequency to extend the analyses to further sample sets with genome wide genotype data. In each case we will investigate indels and larger structural variants as well as SNPs, and use statistical methods that combine rare variants in a locus or pathway as ... (Show More)

Study Datasets 8 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001000171
UK10K_RARE_FIND REL-2012-01-13
Illumina Genome Analyzer II,Illumina HiSeq 2000 44
EGAD00001000190
UK10K_RARE_FIND REL-2012-02-22
Illumina Genome Analyzer II,Illumina HiSeq 2000 90
EGAD00001000209
UK10K_RARE_FIND REL-2012-07-05
Illumina Genome Analyzer II,Illumina HiSeq 2000 121
EGAD00001000297
UK10K_RARE_FIND REL-2012-11-27
Illumina Genome Analyzer II,Illumina HiSeq 2000 124
EGAD00001000416
UK10K_RARE_FIND REL-2013-04-20
Illumina Genome Analyzer II,Illumina HiSeq 2000 124
EGAD00001000750
UK10K_RARE_FIND REL-2013-10-31 variant calling
Illumina HiSeq 2000 1151
EGAD00001000753
UK10K_RARE_FINDWG REL-2013-09-09
Illumina HiSeq 2000 4
EGAD00001000803
UK10K_RARE_FINDWG REL-2013-03-06
Illumina HiSeq 2000 2

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