Study
20 Matched Pair Breast Cancer Genomes
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001000170 | Cancer Genomics |
Study Description
We propose to definitively characterise the somatic genetics of 20 breast cancers through generation of comprehensive catalogues of somatic mutations by high coverage genome sequencing coupled with integrated transcriptomic data.
Study Datasets 6 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001000082 |
20 Matched Pair Breast Cancer Genomes
|
Illumina Genome Analyzer II,Illumina HiSeq 2000 | 42 |
EGAD00001000138 |
The expression data for this study can be found here: http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1088/and its SNP6 data can be found here:http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1087/
|
Illumina Genome Analyzer II,Illumina HiSeq 2000 | 58 |
EGAD00001001335 |
We propose to definitively characterise the somatic genetics of breast cancer through generation of comprehensive catalogues of somatic mutations in breast cancer cases by high coverage genome sequencing coupled with integrated transcriptomic and methylation analyses.
|
Illumina Genome Analyzer II,Illumina HiSeq 2000 | 28 |
EGAD00001001338 |
We propose to definitively characterise the somatic genetics of breast cancer through generation of comprehensive catalogues of somatic mutations in breast cancer cases by high coverage genome sequencing coupled with integrated transcriptomic and methylation analyses.
|
Illumina Genome Analyzer II,Illumina HiSeq 2000 | 49 |
EGAD00001002237 |
The disordered transcriptomes of cancer encompass direct effects of somatic mutation on transcription; co-ordinated secondary alterations in transcriptional pathways; and increased transcriptional noise. To catalogue the rules governing how somatic mutation Overall, 59% of 6980 exonic substitutions were expressed. Compared to other classes, nonsense mutations showed lower expression levels than expected with patterns characteristic of nonsense-mediated decay. 14% of 4234 genomic ... (Show More)
|
Illumina Genome Analyzer II,Illumina HiSeq 2000 | 59 |
EGAD00001002696 |
Recurrent breast cancer is almost universally fatal. We characterize 170 patients locally relapsed or distant metastatic cancers using massively parallel sequencing. We identify that the relapse-seeding clone disseminates late from the primary tumor. TP53 and AKT1 appear to be enriched in ER-positive cancers predisposed to relapse. Mutation acquisition continues at relapse as the same mutation signatures continue to operate and new signatures, such as that caused by radiotherapy appear de novo. ... (Show More)
|
HiSeq X Ten,Illumina HiSeq 2000 | 58 |
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