APCDR AGV Project: WGS of an Ugandan population

The African Genome Variation Project (AGVP) provides a resource to help design, implement and interpret genomic studies in sub-Saharan Africa (SSA) and worldwide. The AGVP represents dense genotypes from 1,481 and whole genome sequences (WGS) from 320 individuals across SSA. As part of the AGVP we sequenced the genome of 100 unrelated Baganda from rural Uganda to about 4x depth.

Type: Other
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 4 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001001008	Low depth (4x) Illumina HiSeq raw sequence data for 100 unrelated Baganda from rural Uganda.	Illumina HiSeq 2000	100

Publications	Citations
The African Genome Variation Project shapes medical genetics in Africa. Gurdasani D, Carstensen T, Tekola-Ayele F, Pagani L, Tachmazidou I, Hatzikotoulas K, Karthikeyan S, Iles L, Pollard MO, Choudhury A, Ritchie GR, Xue Y, Asimit J, Nsubuga RN, Young EH, Pomilla C, Kivinen K, Rockett K, Kamali A, Doumatey AP, Asiki G, Seeley J, Sisay-Joof F, Jallow M, Tollman S, Mekonnen E, Ekong R, Oljira T, Bradman N, Bojang K, Ramsay M, Adeyemo A, Bekele E, Motala A, Norris SA, Pirie F, Kaleebu P, Kwiatkowski D, Tyler-Smith C, Rotimi C, Zeggini E, Sandhu MS. Nature 517: 2015 327-332	339
Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans. McManus KF, Taravella AM, Henn BM, Bustamante CD, Sikora M, Cornejo OE. PLoS Genet 13: 2017 e1006560	51
Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data. Ceballos FC, Hazelhurst S, Ramsay M. BMC Genomics 19: 2018 106	55
Potential Impact of <i>DPYD</i> Variation on Fluoropyrimidine Drug Response in sub-Saharan African Populations. da Rocha JEB, Lombard Z, Ramsay M. Front Genet 12: 2021 626954	5