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Whole exome sequencing of virus-associated HCC

To understand comprehensive combinations of molecular alterations and seek for potential therapeutic targets/pathways in virus-associated HCC, we have conducted a whole exome sequencing (in-solution capturing all human coding exons) of 150 pairs of HCC cases.

Type: Exome Sequencing
Archiver: European Genome-phenome Archive (EGA)

3 Datasets 2 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001000446	Fastq files of 213 samples of hepatocellular carcinoma (NCCRI)	Illumina HiSeq 2000	213
EGAD00001001024	Fastq files of 52 samples of hepatocellular carcinoma(RCAST, THCC)	Illumina HiSeq 2000	104
EGAD00001003804	Exome fastq files of 98 hepatocellular carcinoma and matched nomral (BCM, HCC-JP)	Illumina HiSeq 2000	196

Publications	Citations
Epigenetic landscape influences the liver cancer genome architecture. Hama N, Totoki Y, Miura F, Tatsuno K, Saito-Adachi M, Nakamura H, Arai Y, Hosoda F, Urushidate T, Ohashi S, Mukai W, Hiraoka N, Aburatani H, Ito T, Shibata T. Nat Commun 9: 2018 1643	42
Advances in genomic hepatocellular carcinoma research. Huang W, Skanderup AJ, Lee CG. Gigascience 7: 2018 None	31