Pancreatic Cancer Sequencing Initiative OICR

Pancreatic Cancer Sequencing Initiative for the International Cancer Genome Consortium at the Ontario Institute for Cancer Research.

13 Datasets 3 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001001095	Supporting data for ICGC PACA-CA Release 18	Illumina HiSeq 2000 Illumina HiSeq 2500	506
EGAD00001001595	ICGC PACA-CA Release 20	Illumina HiSeq 2000 Illumina HiSeq 2500	516
EGAD00001001956	ICGC Release 21 for PACA-CA from OICR	Illumina HiSeq 2000 Illumina HiSeq 2500	516
EGAD00001003263	ICGC DCC Release 24, PACA-CA Deep KRAS sequencing		82
EGAD00001003264	ICGC DCC Release 24, PACA-CA Exome sequence		190
EGAD00001003270	ICGC DCC Release 24, PACA-CA Whole Genome sequence merged alignments		95
EGAD00001003591	Merged bam files for PACA-CA Whole Genome Sequencing, for DCC release 25		211
EGAD00001003592	Merged bam files for PACA-CA Whole Exome Sequencing, for DCC release 25		216
EGAD00001003927	Merged bam files for PACA-CA Whole Genome Sequencing, for DCC release 27		246
EGAD00001003945	Bam files for PACA-CA RNA Seq analysis, for DCC release 27		219
EGAD00001003948	Merged bam files for PACA-CA Whole Genome Sequencing, for DCC release 27		39
EGAD00001003972	Fastq files for PACA-CA RNA Seq analysis, for DCC release 27	ILLUMINA Illumina HiSeq 2500	219
EGAD00010001513	Copy Number Variation as determined on Illumia Omin Arrays	Illumina Beadchip	122

Publications	Citations
Accurate and efficient detection of gene fusions from RNA sequencing data. Uhrig S, Ellermann J, Walther T, Burkhardt P, Fröhlich M, Hutter B, Toprak UH, Neumann O, Stenzinger A, Scholl C, Fröhling S, Brors B. Genome Res 31: 2021 448-460	167
Longitudinal Copy-Number Alteration Analysis in Plasma Cell-Free DNA of Neuroendocrine Neoplasms is a Novel Specific Biomarker for Diagnosis, Prognosis, and Follow-up. Boons G, Vandamme T, Mariën L, Lybaert W, Roeyen G, Rondou T, Papadimitriou K, Janssens K, Op de Beeck B, Simoens M, Demey W, Dero I, Van Camp G, Peeters M, Op de Beeck K. Clin Cancer Res 28: 2022 338-349	14
Deeper insights into long-term survival heterogeneity of pancreatic ductal adenocarcinoma (PDAC) patients using integrative individual- and group-level transcriptome network analyses. Bhardwaj A, Josse C, Van Daele D, Poulet C, Chavez M, Struman I, Van Steen K. Sci Rep 12: 2022 11027	2