Study

DNA from colon cancer samples and matched normal samples was hybridized on Human 660W-Quad SNP arrays and sequenced in Illumina HiScanSQ.

Study ID Alternative Stable ID Type
EGAS00001000558 Other

Study Description

DNA from colon cancer samples and matched normal samples was hybridized on Human 660W-Quad SNP arrays and sequenced in Illumina HiScanSQ. The objective of the study was to introduce methodology for the detection of genomic copy number alterations (CNAs) using high-throughput sequencing data. The samples in this study allow the comparison of the results from the seqCNA R package with those from other methods that detect copy number alterations (CNAs) in tumoural samples, either using SNP-array data or high-throughput sequencing data.

Study Datasets 4 datasets.

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Dataset ID Description Technology Samples
EGAD00001000642
NA
Illumina HiScanSQ 2
EGAD00001000643
NA
Illumina HiScanSQ 2
EGAD00010000492
Cases_Human660W-Quad_v1_A
Illumina_Human660W-Quad_v1_A-Not supplied 4
EGAD00010000494
Controls_Human660W-Quad_v1_A
Illumina_Human660W-Quad_v1_A-Not supplied 4

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