Study
DNA from colon cancer samples and matched normal samples was hybridized on Human 660W-Quad SNP arrays and sequenced in Illumina HiScanSQ.
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001000558 | Other |
Study Description
DNA from colon cancer samples and matched normal samples was hybridized on Human 660W-Quad SNP arrays and sequenced in Illumina HiScanSQ. The objective of the study was to introduce methodology for the detection of genomic copy number alterations (CNAs) using high-throughput sequencing data. The samples in this study allow the comparison of the results from the seqCNA R package with those from other methods that detect copy number alterations (CNAs) in tumoural samples, either using SNP-array data or high-throughput sequencing data.
Study Datasets 4 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001000642 |
NA
|
Illumina HiScanSQ | 2 |
EGAD00001000643 |
NA
|
Illumina HiScanSQ | 2 |
EGAD00010000492 |
Cases_Human660W-Quad_v1_A
|
Illumina_Human660W-Quad_v1_A-Not supplied | 4 |
EGAD00010000494 |
Controls_Human660W-Quad_v1_A
|
Illumina_Human660W-Quad_v1_A-Not supplied | 4 |
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