Study

Canadian Prostate Cancer Genome Network

Study ID Alternative Stable ID Type
EGAS00001000900 Other

Study Description

Over 5 years, CPC-GENE will sequence the genomes of 350 intermediate risk prostate cancers to identify genetic signatures that differ in cancers that responded well to treatment compared with those that did not. CPC-GENE will also sequence multiple regions of prostate cancer from the same gland to determine if and how the genetic make-up of prostate cancer varies within an individual man’s prostate

Study Datasets 32 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001001094
200PG : WGS Raw Sequence (fastq) : Raw WG sequence data (fastq) in this dataset are from the 124 CPCGene Tumour/Normal Pairs used in the 200PG Study. https://www.ncbi.nlm.nih.gov/pubmed/28068672
Illumina HiSeq 2500 247
EGAD00001001115
SeqControl
Illumina HiSeq 2500 54
EGAD00001003139
200PG : WGS Aligned Sequence (fastq) : Aligned WG sequence data (bam) in this dataset are from the 124 CPCGene Tumour/Normal Pairs used in the 200PG Study. https://www.ncbi.nlm.nih.gov/pubmed/28068672
262
EGAD00001003706
PRAD-CA, DCC Release 26 : This dataset contains fastq files with Whole genome sequencing data for the CPC-Gene Project. Data from each sample was generated using multiple whole genome libraries and sequenced across multiple runs
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified 616
EGAD00001003756
Prostate Cancer - RNA-Seq unmapped reads
Illumina HiSeq 2000 98
EGAD00001003761
This dataset contains fastq files with Whole genome sequencing data for the CPC-Gene Project. Data from each sample was generated using multiple whole genome libraries and sequenced across multiple runs
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified 617
EGAD00001003909
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
HiSeq X Ten,Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified 610
EGAD00001003957
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified 23
EGAD00001003975
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
HiSeq X Ten,Illumina HiSeq 2500,unspecified 128
EGAD00001004061
200PT : WG Aligned Sequence (bam)/ Aligned WG sequence data in this dataset are from CPCGene Tumour/Normal Pairs used in the 200PT Study
404
EGAD00001004072
200PT : SNV vcf files. SNV calls generated using SomaticSniper and PhyloWGS, from the CPCGene 200PT Subclonality study
293
EGAD00001004073
200PT : CNA vcf files. Copy Number Abberation calls generated using TITAN and PhyloWGS, from the CPCGene 200PT Subclonality study
292
EGAD00001004400
SNV calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
538
EGAD00001004401
SNV calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
562
EGAD00001004402
SNV calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
580
EGAD00001004403
CNA calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
538
EGAD00001004404
CNA calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
562
EGAD00001004405
CNA calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
580
EGAD00001004424
Prostate Cancer - RNA-Seq unmapped reads
Illumina HiSeq 2000 148
EGAD00001004431
SNV calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004432
SNV calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004433
SNV calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004434
SNV calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004440
CNA calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004441
CNA calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004442
CNA calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004443
CNA calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
40
EGAD00001004875
Aligned RNA-seq sequences in this dataset are from the Proteogenomic Landscape of Curable Prostate Cancer study
56
EGAD00010001218
Raw Array data from the CPCGene 200PG study
Affymetrix OncoScan FFPE Express 502
EGAD00010001414
Raw Array data from the PRAD-CA for ICGC DCC Release26
Affymetrix OncoScan FFPE Express N/A
EGAD00010001519
Raw Array data from the PRAD-CA for ICGC DCC Release27
Affymetrix OncoScan FFPE Express 110
EGAD00010001703
RNAseq reads were aligned with STAR 2.5.3a and gene expression was quantified with RSEM 1.3.0
144

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