Study
Canadian Prostate Cancer Genome Network
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001000900 | Other |
Study Description
Over 5 years, CPC-GENE will sequence the genomes of 350 intermediate risk prostate cancers to identify genetic signatures that differ in cancers that responded well to treatment compared with those that did not. CPC-GENE will also sequence multiple regions of prostate cancer from the same gland to determine if and how the genetic make-up of prostate cancer varies within an individual man’s prostate
Study Datasets 32 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001001094 |
200PG : WGS Raw Sequence (fastq) : Raw WG sequence data (fastq) in this dataset are from the 124 CPCGene Tumour/Normal Pairs used in the 200PG Study. https://www.ncbi.nlm.nih.gov/pubmed/28068672
|
Illumina HiSeq 2500 | 247 |
EGAD00001001115 |
SeqControl
|
Illumina HiSeq 2500 | 54 |
EGAD00001003139 |
200PG : WGS Aligned Sequence (fastq) : Aligned WG sequence data (bam) in this dataset are from the 124 CPCGene Tumour/Normal Pairs used in the 200PG Study. https://www.ncbi.nlm.nih.gov/pubmed/28068672
|
262 | |
EGAD00001003706 |
PRAD-CA, DCC Release 26 : This dataset contains fastq files with Whole genome sequencing data for the CPC-Gene Project. Data from each sample was generated using multiple whole genome libraries and sequenced across multiple runs
|
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified | 616 |
EGAD00001003756 |
Prostate Cancer - RNA-Seq unmapped reads
|
Illumina HiSeq 2000 | 98 |
EGAD00001003761 |
This dataset contains fastq files with Whole genome sequencing data for the CPC-Gene Project. Data from each sample was generated using multiple whole genome libraries and sequenced across multiple runs
|
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified | 617 |
EGAD00001003909 |
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
|
HiSeq X Ten,Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified | 610 |
EGAD00001003957 |
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
|
Illumina HiSeq 2000,Illumina HiSeq 2500,unspecified | 23 |
EGAD00001003975 |
Raw lane level fastq files from Whole genome sequencing in support of ICGC PRAD-CA Variant calls
|
HiSeq X Ten,Illumina HiSeq 2500,unspecified | 128 |
EGAD00001004061 |
200PT : WG Aligned Sequence (bam)/ Aligned WG sequence data in this dataset are from CPCGene Tumour/Normal Pairs used in the 200PT Study
|
404 | |
EGAD00001004072 |
200PT : SNV vcf files. SNV calls generated using SomaticSniper and PhyloWGS, from the CPCGene 200PT Subclonality study
|
293 | |
EGAD00001004073 |
200PT : CNA vcf files. Copy Number Abberation calls generated using TITAN and PhyloWGS, from the CPCGene 200PT Subclonality study
|
292 | |
EGAD00001004400 |
SNV calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
538 | |
EGAD00001004401 |
SNV calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
562 | |
EGAD00001004402 |
SNV calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
580 | |
EGAD00001004403 |
CNA calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
538 | |
EGAD00001004404 |
CNA calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
562 | |
EGAD00001004405 |
CNA calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
|
580 | |
EGAD00001004424 |
Prostate Cancer - RNA-Seq unmapped reads
|
Illumina HiSeq 2000 | 148 |
EGAD00001004431 |
SNV calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004432 |
SNV calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004433 |
SNV calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004434 |
SNV calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004440 |
CNA calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004441 |
CNA calls generated using the SomaticSniper-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004442 |
CNA calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004443 |
CNA calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study using single and multiple regions
|
40 | |
EGAD00001004875 |
Aligned RNA-seq sequences in this dataset are from the Proteogenomic Landscape of Curable Prostate Cancer study
|
56 | |
EGAD00010001218 |
Raw Array data from the CPCGene 200PG study
|
Affymetrix OncoScan FFPE Express | 502 |
EGAD00010001414 |
Raw Array data from the PRAD-CA for ICGC DCC Release26
|
Affymetrix OncoScan FFPE Express | N/A |
EGAD00010001519 |
Raw Array data from the PRAD-CA for ICGC DCC Release27
|
Affymetrix OncoScan FFPE Express | 110 |
EGAD00010001703 |
RNAseq reads were aligned with STAR 2.5.3a and gene expression was quantified with RSEM 1.3.0
|
144 |
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