APCDR AGV Project: The African Genome Variation Project(dense array genotyping data)

Dataset ID	Description	Technology	Samples
EGAD00010001045	APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2.5-4v1_B	-
EGAD00010001046	APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001047	APCDR AGV Project: Array data from 107 Ethiopians (Amhara, Oromo, Somali; subset of Ethiopian Genome Project Genotyping). Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001048	APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001049	APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2.5-4v1_B	-
EGAD00010001050	APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001051	APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001052	APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2.5-4v1_B	-
EGAD00010001053	APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A	-
EGAD00010001054	APCDR AGV Project: Array data from 74 Fula	Illumina HumanOmni2-5_8v1_A	-
EGAD00010001055	APCDR AGV Project: Array data from 100 Baganda. Raw data, intensity files and post-QC Plink files.		-
EGAD00010001056	APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A	-
EGAD00010001057	APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files.	Illumina HumanOmni2-5_8v1_A	-

Publications	Citations
The African Genome Variation Project shapes medical genetics in Africa. Gurdasani D, Carstensen T, Tekola-Ayele F, Pagani L, Tachmazidou I, Hatzikotoulas K, Karthikeyan S, Iles L, Pollard MO, Choudhury A, Ritchie GR, Xue Y, Asimit J, Nsubuga RN, Young EH, Pomilla C, Kivinen K, Rockett K, Kamali A, Doumatey AP, Asiki G, Seeley J, Sisay-Joof F, Jallow M, Tollman S, Mekonnen E, Ekong R, Oljira T, Bradman N, Bojang K, Ramsay M, Adeyemo A, Bekele E, Motala A, Norris SA, Pirie F, Kaleebu P, Kwiatkowski D, Tyler-Smith C, Rotimi C, Zeggini E, Sandhu MS. Nature 517: 2015 327-332	339
Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans. McManus KF, Taravella AM, Henn BM, Bustamante CD, Sikora M, Cornejo OE. PLoS Genet 13: 2017 e1006560	52
Whole-Genome-Sequence-Based Haplotypes Reveal Single Origin of the Sickle Allele during the Holocene Wet Phase. Shriner D, Rotimi CN. Am J Hum Genet 102: 2018 547-556	47
Genetic differentiation in East African ethnicities and its relationship with endurance running success. Zani ALS, Gouveia MH, Aquino MM, Quevedo R, Menezes RL, Rotimi C, Lwande GO, Ouma C, Mekonnen E, Fagundes NJR. PLoS One 17: 2022 e0265625	4
Low and differential polygenic score generalizability among African populations due largely to genetic diversity. Majara L, Kalungi A, Koen N, Tsuo K, Wang Y, Gupta R, Nkambule LL, Zar H, Stein DJ, Kinyanda E, Atkinson EG, Martin AR. HGG Adv 4: 2023 100184	22
BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups. Breton G, Barham L, Mudenda G, Soodyall H, Schlebusch CM, Jakobsson M. Nat Commun 15: 2024 7307	0