Study

APCDR AGV Project: The African Genome Variation Project(dense array genotyping data)

Study ID Alternative Stable ID Type
EGAS00001000959 Other

Study Description

The African Genome Variation Project (AGVP) aims to provide a global resource to understand population diversity and help design, implement and interpret genomic studies in sub-Saharan Africa (SSA), and worldwide. The AGVP represents dense genotyping data on 1,481 individuals from 18 ethno-linguistic groups and low coverage whole genome sequencing data on 320 individuals from 7 ethno-linguistic groups in SSA.

Study Datasets 14 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00010001045
APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B N/A
EGAD00010001046
APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001047
APCDR AGV Project: Array data from 107 Ethiopians (Amhara, Oromo, Somali; subset of Ethiopian Genome Project Genotyping). Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001048
APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001049
APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B N/A
EGAD00010001050
APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001051
APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001052
APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B N/A
EGAD00010001053
APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A N/A
EGAD00010001054
APCDR AGV Project: Array data from 74 Fula
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001055
APCDR AGV Project: Array data from 100 Baganda. Raw data, intensity files and post-QC Plink files.
N/A
EGAD00010001056
APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A N/A
EGAD00010001057
APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2-5_8v1_A N/A
EGAD00010001058
APCDR AGV Project: Array data from 100 Ga-Adangbe. Raw data, intensity files and post-QC Plink files.
Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A N/A

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