Study

560 whole-genome sequenced breast cancers

Study ID Alternative Stable ID Type
EGAS00001001178 Other

Study Description

A comprehensive characterisation and analysis of 560 human breast cancers through genome-wide approaches including genomics, transcriptomics and epigenomics.

Study Datasets 4 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00010000915
Affymetrix SNP6.0 breast cancer genome sequencing data
Affymetrix SNP6.0 344
EGAD00010000916
BASIS breast cancer DNA methylation Illumina 450k
Illumina 450k 457
EGAD00010000917
399 tumors profiled using Agilent miRNA microarrays (Product Number G4872A, design ID 046064). The arrays are based on miRBase release 19.0 and 2006 human miRNAs are represented. 150 ng total RNA was used as input.
Agilent miRNA microarrays 399
EGAD00010001911
Fresh frozen breast cancer H&E tissue images collected and annotated by the International Cancer Genome Consortium (ICGC), that included the BASIS collaboration. Associated with whole genome sequence data as originally described by Nik-Zainal et al, Nature, 2016 (DOI: 10.1038/nature17676) and deposited with ID EGAS00001001178
H and E image 151

Who archives the data?

Publications

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