Papuan Genomes: whole genome sequencing - EGA European Genome-Phenome Archive

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001001634	This dataset includes the whole genomes, sequenced to high depth (30x) of 25 individuals from Papua New Guinea. The individuals were chosen from several geographically distinct Papuan groups, focusing on the highland regions: Bundi, Kundiawa, Mendi, Marawaka and Tari.	HiSeq X Ten	25

Publications	Citations
A genomic history of Aboriginal Australia. Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E. Nature 538: 2016 207-214	195
Detecting archaic introgression using an unadmixed outgroup. Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R. PLoS Genet 14: 2018 e1007641	46
A Revised Model of Anatomically Modern Human Expansions Out of Africa through a Machine Learning Approximate Bayesian Computation Approach. Vizzari MT, Benazzo A, Barbujani G, Ghirotto S. Genes (Basel) 11: 2020 E1510	2
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul. Brucato N, André M, Tsang R, Saag L, Kariwiga J, Sesuki K, Beni T, Pomat W, Muke J, Meyer V, Boland A, Deleuze JF, Sudoyo H, Mondal M, Pagani L, Gallego Romero I, Metspalu M, Cox MP, Leavesley M, Ricaut FX. Mol Biol Evol 38: 2021 5107-5121	11
Chronology of natural selection in Oceanian genomes. Brucato N, André M, Hudjashov G, Mondal M, Cox MP, Leavesley M, Ricaut FX. iScience 25: 2022 104583	4
Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels. André M, Brucato N, Hudjasov G, Pankratov V, Yermakovich D, Montinaro F, Kreevan R, Kariwiga J, Muke J, Boland A, Deleuze JF, Meyer V, Evans N, Cox MP, Leavesley M, Dannemann M, Org T, Metspalu M, Mondal M, Ricaut FX. Nat Commun 15: 2024 3352	5