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TraIT Cell Line use case

Experimental data collected from a set of cell lines. To be used as a test for pipelines and infrastructure.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001001626 Illumina Genome Analyzer II 6
EGAD00001002069 2
EGAD00001002071 5
EGAD00001002109 5
EGAD00001002250 Illumina HiSeq 2000 1
EGAD00010000934 Agilent SurePrint Human miRNA Microarray 2
EGAD00010000935 Agilent 244K 10
EGAD00010000936 Affymetrix GeneChip Human Exon 1.0 ST 2
EGAD00010000937 Agilent 180K 5
EGAD00010000938 Agilent 44K 16
EGAD00010000939 Illumina 1M SNP Array 2
EGAD00010001006 Liquid chromatography–mass spectrometry 8
Publications Citations
Integration of EGA secure data access into Galaxy.
F1000Res 5: 2016 ELIXIR-2841
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data.
F1000Res 6: 2017 ELIXIR-1488
Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA-minus RNA sequencing data.
Gigascience 10: 2021 giab080