Study
Whole genome sequencing of primary and metastatic Melanoma cases in an Australian cohort.
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001001552 | Other |
Study Description
Melanoma is the fourth most common cancer in Australia and the leading
cause of cancer death in young adults. The Australian Melanoma Genome
Project (AMGP) is analysing whole genomes from melanomas. We include the results of whole
genome sequencing (WGS) for a number of datasets that include cutaneous, acral and mucosal melanoma subtypes.
Study Datasets 12 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001003353 |
BAM outputs from STAR (https://github.com/alexdobin/STAR) analysis of RNASeq sequencing on HiSeq platform of 56 tumour samples from 46 melanoma cases.
Gene model = Ensembl version 70
|
N/A | |
EGAD00001003357 |
Aligned, merged and deduplicated BAM files from HiSeq whole exome sequencing of 106 samples: matched tumour-normal pairs from 53 melanoma patients.
|
N/A | |
EGAD00001003388 |
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 366 samples: matched tumour-normal pairs from 183 melanoma cases comprising 48 primary melanomas, 15 cell lines, and 120 metastases. Sequencing was performed on the Illumina HiSeq 2000 and Xten platforms at Australian and Korean sequencing centres. Data was aligned to the human genome (GRCh37) using BWA-MEM.
|
N/A | |
EGAD00001004409 |
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 134 samples: matched tumour-normal pairs from 67 mucosal melanoma cases
|
N/A | |
EGAD00001004474 |
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 28 samples: matched tumour-normal pairs from 14 melanocytic nevi cases
|
N/A | |
EGAD00001004869 |
Illumina platform sequencing data for matched tumour-normal DNA samples from 77 melanoma patients participating in a study investigating response to immunotherapy. Selected cases also have RNA sequencing of the tumour.
|
N/A | |
EGAD00001005454 |
Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 103 cases of melanoma Uveal subtype
|
N/A | |
EGAD00001005500 |
Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 87 cases of melanoma Acral subtype. 63 cases also have RNASeq sequencing from the tumour sample.
|
N/A | |
EGAD00001005501 |
Illumina RNASeq sequencing of tumour samples from 41 cases of melanoma
|
N/A | |
EGAD00001005738 |
79 RNAseq samples from 56 patients with melanoma who have undergone immune checkpoint blockade immunotherapy.
|
N/A | |
EGAD00001006439 |
Illumina RNASeq sequencing of tumour samples from 53 cases of cutaneous melanoma and 61 cases of acral melanoma
|
1 | |
EGAD00001007055 |
RNAseq of 55 melanoma tumors that were used as a validation dataset in Garg et al Nat Commun, 2021 Feb 18;12(1):1137. doi: 10.1038/s41467-021-21207-2.
|
N/A |
Who archives the data?

Publications
Citations
Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...

Retrieving...
