Study

Whole genome sequencing of primary and metastatic Melanoma cases in an Australian cohort.

Study ID Alternative Stable ID Type
EGAS00001001552 Other

Study Description

Melanoma is the fourth most common cancer in Australia and the leading cause of cancer death in young adults. The Australian Melanoma Genome Project (AMGP) is analysing whole genomes from melanomas. We include the results of whole genome sequencing (WGS) for a number of datasets that include cutaneous, acral and mucosal melanoma subtypes.

Study Datasets 9 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001003353
BAM outputs from STAR (https://github.com/alexdobin/STAR) analysis of RNASeq sequencing on HiSeq platform of 56 tumour samples from 46 melanoma cases. Gene model = Ensembl version 70
56
EGAD00001003357
Aligned, merged and deduplicated BAM files from HiSeq whole exome sequencing of 106 samples: matched tumour-normal pairs from 53 melanoma patients.
106
EGAD00001003388
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 366 samples: matched tumour-normal pairs from 183 melanoma cases comprising 48 primary melanomas, 15 cell lines, and 120 metastases. Sequencing was performed on the Illumina HiSeq 2000 and Xten platforms at Australian and Korean sequencing centres. Data was aligned to the human genome (GRCh37) using BWA-MEM.
366
EGAD00001004409
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 134 samples: matched tumour-normal pairs from 67 mucosal melanoma cases
134
EGAD00001004474
Aligned, merged and deduplicated BAM files from HiSeq whole genome sequencing of 28 samples: matched tumour-normal pairs from 14 melanocytic nevi cases
28
EGAD00001005454
Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 103 cases of melanoma Uveal subtype
206
EGAD00001005500
Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 88 cases of melanoma Acral subtype. 64 cases also have RNASeq sequencing from the tumour sample.
237
EGAD00001005501
Illumina RNASeq sequencing of tumour samples from 41 cases of melanoma
41
EGAD00001005738
79 RNAseq samples from 56 patients with melanoma who have undergone immune checkpoint blockade immunotherapy.
79

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