Investigating genetic susceptibility to rheumatic heart disease in Oceania

Study ID	Alternative Stable ID	Type
EGAS00001001881		Other

Study ID

Alternative Stable ID

Type

EGAS00001001881

Other

Study Description

This case-control study investigated susceptibility to rheumatic heart disease in over 3,000 individuals recruited across eight Oceanian countries. Cases were patients with rheumatic heart disease and controls were members of the general population. In addition to the Illumina HumanCore-24 BeadChip genotyping, a subset of 128 samples were analysed using the higher density Illumina HumanOmniExpressExome BeadChip of which 64 were also analysed using low coverage sequencing with the Illumina HiSeq 4000 platform.

Dataset ID	Description	Technology	Samples
EGAD00001002665	Mapped sequence reads in BAM format for 64 individuals reporting Kanak ancestry recruited in New Caledonia sequenced at four times target coverage using the Illumina HiSeq 4000 platform. Mapped sequence reads in BAM format for 64 individuals reporting Kanak ancestry recruited in New Caledonia sequenced at four times target coverage using the Illumina HiSeq 4000 platform.		64
EGAD00010000953	Healthy adult volunteers and newborns recruited in various countries across Oceania. Healthy adult volunteers and newborns recruited in various countries across Oceania.	HumanCore-24 BeadChip	937
EGAD00010000954	Healthy volunteers recruited in New Caledonia Healthy volunteers recruited in New Caledonia	HumanCore-24 BeadChip	356
EGAD00010000955	Rheumatic heart disease cases recruited in Fiji with higher density genotyping Rheumatic heart disease cases recruited in Fiji with higher density genotyping	HumanOmniExpressExome-8 BeadChip	32
EGAD00010000956	Rheumatic heart disease cases recruited in New Caledonia with higher density genotyping Rheumatic heart disease cases recruited in New Caledonia with higher density genotyping	HumanOmniExpressExome-8 BeadChip	34
EGAD00010000957	Rheumatic heart disease cases recruited in New Caledonia Rheumatic heart disease cases recruited in New Caledonia	HumanCore-24 BeadChip	465
EGAD00010000958	Healthy volunteers recruited in Fiji with higher density genotyping Healthy volunteers recruited in Fiji with higher density genotyping	HumanOmniExpressExome-8 BeadChip	32
EGAD00010000959	Healthy volunteers recruited in Fiji Healthy volunteers recruited in Fiji	HumanCore-24 BeadChip	854
EGAD00010000960	Definite and borderline rheumatic heart disease cases and patients with mild non-diagnostic valvulopathy recruited in Samoa Definite and borderline rheumatic heart disease cases and patients with mild non-diagnostic valvulopathy recruited in Samoa	HumanCore-24 BeadChip	126
EGAD00010000961	Rheumatic heart disease cases recruited in Fiji Rheumatic heart disease cases recruited in Fiji	HumanCore-24 BeadChip	535
EGAD00010000962	Healthy volunteers and missing phenotype individuals recruited in New Caledonia with higher density genotyping Healthy volunteers and missing phenotype individuals recruited in New Caledonia with higher density genotyping	HumanOmniExpressExome-8 BeadChip	30
EGAD00010000963	Healthy volunteers recruited in Samoa Healthy volunteers recruited in Samoa	HumanCore-24 BeadChip	24

Dataset ID

Description

Technology

Samples

EGAD00001002665

Mapped sequence reads in BAM format for 64 individuals reporting Kanak ancestry recruited in New Caledonia sequenced at four times target coverage using the Illumina HiSeq 4000 platform.

EGAD00010000953

Healthy adult volunteers and newborns recruited in various countries across Oceania.

HumanCore-24 BeadChip

937

EGAD00010000954

Healthy volunteers recruited in New Caledonia

HumanCore-24 BeadChip

356

EGAD00010000955

Rheumatic heart disease cases recruited in Fiji with higher density genotyping

HumanOmniExpressExome-8 BeadChip

EGAD00010000956