Study

Investigating genetic susceptibility to rheumatic heart disease in Oceania

Study ID Alternative Stable ID Type
EGAS00001001881 Other

Study Description

This case-control study investigated susceptibility to rheumatic heart disease in over 3,000 individuals recruited across eight Oceanian countries. Cases were patients with rheumatic heart disease and controls were members of the general population. In addition to the Illumina HumanCore-24 BeadChip genotyping, a subset of 128 samples were analysed using the higher density Illumina HumanOmniExpressExome BeadChip of which 64 were also analysed using low coverage sequencing with the Illumina HiSeq 4000 platform.

Study Datasets 12 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001002665
Mapped sequence reads in BAM format for 64 individuals reporting Kanak ancestry recruited in New Caledonia sequenced at four times target coverage using the Illumina HiSeq 4000 platform.
64
EGAD00010000953
Healthy adult volunteers and newborns recruited in various countries across Oceania.
HumanCore-24 BeadChip 937
EGAD00010000954
Healthy volunteers recruited in New Caledonia
HumanCore-24 BeadChip 356
EGAD00010000955
Rheumatic heart disease cases recruited in Fiji with higher density genotyping
HumanOmniExpressExome-8 BeadChip 32
EGAD00010000956
Rheumatic heart disease cases recruited in New Caledonia with higher density genotyping
HumanOmniExpressExome-8 BeadChip 34
EGAD00010000957
Rheumatic heart disease cases recruited in New Caledonia
HumanCore-24 BeadChip 465
EGAD00010000958
Healthy volunteers recruited in Fiji with higher density genotyping
HumanOmniExpressExome-8 BeadChip 32
EGAD00010000959
Healthy volunteers recruited in Fiji
HumanCore-24 BeadChip 854
EGAD00010000960
Definite and borderline rheumatic heart disease cases and patients with mild non-diagnostic valvulopathy recruited in Samoa
HumanCore-24 BeadChip 126
EGAD00010000961
Rheumatic heart disease cases recruited in Fiji
HumanCore-24 BeadChip 535
EGAD00010000962
Healthy volunteers and missing phenotype individuals recruited in New Caledonia with higher density genotyping
HumanOmniExpressExome-8 BeadChip 30
EGAD00010000963
Healthy volunteers recruited in Samoa
HumanCore-24 BeadChip 24

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