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Single cell Transcriptomic Analysis of Cellular Heterogeneity in Human Colorectal Tumors

1,591 single cells from 11 colorectal cancer patients were profiled using Fluidigm based single cell RNA-seq protocol to characterized cellular heterogeneity of colorectal cancer. 630 single cells from 7 cell lines were profiled similarly to benchmark de novo cell type identification algorithms.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001002727 Illumina HiSeq 3000 2221
EGAD00001007946 Illumina HiSeq 2000 Illumina HiSeq 3000 Illumina HiSeq 4000 57
Publications Citations
Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer.
Exp Mol Med 52: 2020 1976-1988
Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis.
Nat Commun 13: 2022 4913
Genome-scale modeling predicts metabolic differences between macrophage subtypes in colorectal cancer.
iScience 26: 2023 107569