Study

The aim of this project is to identify, on 15 French Caucasian and 10 African-Caribbean men, through an integrative approach of DNA sequencing and transciptomic analyses, relevant genomic events that characterize or allow targeting the various phenotypes of aggressiveness of early stages of prostate cancer.

Study ID Alternative Stable ID Type
EGAS00001002176 Other

Study Description

Every year about 70,000 new cases of prostate cancer are diagnosed in France and 8,700 men died from this disease. But the incidence and the rate of mortality per 100,000 men in the French West Indies are respectively 1.5x and 2x upper than the rates observed in the metropolitan France. The aim of this project is to identify, on 15 French Caucasian and 10 African-Caribbean men, through an integrative approach of DNA sequencing and transciptomic analyses, relevant genomic events that characterize or allow targeting the various phenotypes of aggressiveness of early stages of prostate cancer.

Study Datasets 6 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001003115
Whole genome sequencing data of 15 French Caucasian and 10 African-Caribbean men with prostate Cancer.
Illumina HiSeq 2000 50
EGAD00001003306
Exome sequencing data of 15 French Caucasian and 10 African-Caribbean men with prostate Cancer.
Illumina HiSeq 2000 50
EGAD00001003344
Transcriptome profiling of 25 prostate tumor samples by RNA-Seq
Illumina HiSeq 2000 25
EGAD00001003835
Whole genome sequencing data of 25 prostate tumor and corresponding normal samples, aligned with the CGP BWA-mem workflow.
Illumina HiSeq 2000 50
EGAD00010001280
Transcriptome array dataset
Affymetrix HG_U133_+2 25
EGAD00010001281
SNP array dataset
HUMANOMNIEXPRESS 50

Who archives the data?

There are no publications available