Study

Comprehensive genomic profiling of matched glioblastoma tumours, cell-lines, and xenografts reveals genomic stability and adaptation to disparate growth environments

Study ID Alternative Stable ID Type
EGAS00001002709 Other

Study Description

The mandate of this project was to use drug screening to deliver new drugs for glioblastoma (GBM) to clinical trials, and perform genomic assessment of GBM to discover new therapeutic targets and predictors of response. The sequencing data in this set was derived from GBM patient tumor samples, matched brain tumor initiating cells lines (BTICs), and tumor tissue derived from orthotopic implants.

Study Datasets 61 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001004221
WGS and RNA-Seq data from a GBM patient PT-AB0029
Illumina HiSeq 2000 N/A
EGAD00001004222
WGS and RNA-Seq data from a GBM patient PT-AB6372
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001004223
WGS and RNA-Seq data from a GBM patient PT-AH1410
Illumina HiSeq 2000 N/A
EGAD00001004224
WGS and RNA-Seq data from a GBM patient PT-AK7565
Illumina HiSeq 2500 N/A
EGAD00001004225
WGS and RNA-Seq data from a GBM patient PT-AL4257
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001004226
Genome sequence data from a GBM patient PT-AR3050
Illumina HiSeq 2500 N/A
EGAD00001004227
WGS and RNA-Seq data from a GBM patient PT-AR5365
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004228
WGS and RNA-Seq data from a GBM patient PT-BK0248
Illumina HiSeq 2500 N/A
EGAD00001004229
WGS and RNA-Seq data from a GBM patient PT-BM772
Illumina HiSeq 2000 1
EGAD00001004230
WGS and RNA-Seq data from a GBM patient PT-CA2271
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004231
WGS and RNA-Seq data from a GBM patient PT-CM1209
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001004232
WGS and RNA-Seq data from a GBM patient PT-DF5919
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001004233
WGS and RNA-Seq data from a GBM patient PT-DS9789
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004234
WGS and RNA-Seq data from a GBM patient PT-EV3071
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004235
WGS and RNA-Seq data from a GBM patient PT-FB6711
Illumina HiSeq 2000 1
EGAD00001004236
Genome sequence data from a GBM patient PT-FR7453
N/A
EGAD00001004237
WGS and RNA-Seq data from a GBM patient PT-GB9186
Illumina HiSeq 2000 N/A
EGAD00001004238
WGS and RNA-Seq data from a GBM patient PT-GB9483
Illumina HiSeq 2500 N/A
EGAD00001004239
WGS and RNA-Seq data from a GBM patient PT-GC1519
Illumina HiSeq 2500 1
EGAD00001004240
WGS and RNA-Seq data from a GBM patient PT-GJ3716
Illumina HiSeq 2500 2
EGAD00001004241
WGS and RNA-Seq data from a GBM patient PT-GR2309
Illumina HiSeq 2500 N/A
EGAD00001004242
WGS and RNA-Seq data from a GBM patient PT-HN6692
Illumina HiSeq 2500 N/A
EGAD00001004243
WGS and RNA-Seq data from a GBM patient PT-HO0394
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004244
WGS data from a GBM patient PT-HS9105
N/A
EGAD00001004245
WGS and RNA-Seq data from a GBM patient PT-JB1730
Illumina HiSeq 2000 N/A
EGAD00001004246
WGS and RNA-Seq data from a GBM patient PT-JE6375
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004247
WGS and RNA-Seq data from a GBM patient PT-JP2405
Illumina HiSeq 2500 N/A
EGAD00001004248
WGS and RNA-Seq data from a GBM patient PT-JW6420
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004249
WGS and RNA-Seq data from a GBM patient PT-KM5291
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004250
WGS and RNA-Seq data from a GBM patient PT-LC3356
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004251
WGS and RNA-Seq data from a GBM patient PT-LR9369
Illumina HiSeq 2000 N/A
EGAD00001004252
WGS and RNA-Seq data from a GBM patient PT-LS4891
Illumina HiSeq 2000 N/A
EGAD00001004253
WGS and RNA-Seq data from a GBM patient PT-MB9777
Illumina HiSeq 2000,Illumina HiSeq 2500 3
EGAD00001004254
WGS and RNA-Seq data from a GBM patient PT-MD9088
Illumina HiSeq 2500 1
EGAD00001004255
WGS and RNA-Seq data from a GBM patient PT-PD6881
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004256
WGS and RNA-Seq data from a GBM patient PT-RD1291
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004257
WGS and RNA-Seq data from a GBM patient PT-RL5404
Illumina HiSeq 2000 1
EGAD00001004258
WGS and RNA-Seq data from a GBM patient PT-RL7940
Illumina HiSeq 2000 N/A
EGAD00001004259
WGS and RNA-Seq data from a GBM patient PT-RW9277
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004260
WGS and RNA-Seq data from a GBM patient PT-SK0976
Illumina HiSeq 2000,Illumina HiSeq 2500 1
EGAD00001004261
WGS and RNA-Seq data from a GBM patient PT-SO0258
Illumina HiSeq 2000 1
EGAD00001004262
WGS and RNA-Seq data from a GBM patient PT-TM5196
Illumina HiSeq 2500 1
EGAD00001004263
WGS and RNA-Seq data from a GBM patient PT-VO7089
Illumina HiSeq 2000,Illumina HiSeq 2500 N/A
EGAD00001004264
WGS data from a GBM patient PT-WP9124
Illumina HiSeq 2500 1
EGAD00001008516
WGS and RNA-Seq data from a GBM patient PT-BM8772
Illumina HiSeq 2500 1
EGAD00001008517
WGS and RNA-Seq data from a GBM patient PT-CM3220
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001008518
WGS and RNA-Seq data from a GBM patient PT-DM9089
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001008519
WGS and RNA-Seq data from a GBM patient PT-GE7528
Illumina HiSeq 2000 1
EGAD00001008520
WGS and RNA-Seq data from a GBM patient PT-GI2070
Illumina HiSeq 2000 1
EGAD00001008521
WGS and RNA-Seq data from a GBM patient PT-JR9883
Illumina HiSeq 2000 1
EGAD00001008522
WGS and RNA-Seq data from a GBM patient PT-LC6372
Illumina HiSeq 2500 1
EGAD00001008523
WGS and RNA-Seq data from a GBM patient PT-ML9537
Illumina HiSeq 2500 1
EGAD00001008524
WGS data from a GBM patient PT-MS8478
N/A
EGAD00001008525
WGS and RNA-Seq data from a GBM patient PT-PR5617
Illumina HiSeq 2000,Illumina HiSeq 2500 2
EGAD00001008526
WGS and RNA-Seq data from a GBM patient PT-PV2594
Illumina HiSeq 2000,Illumina HiSeq 2500 5
EGAD00001008527
WGS and RNA-Seq data from a GBM patient PT-RV2286
Illumina HiSeq 2500 1
EGAD00001008528
WGS data from a GBM patient PT-SB3465
N/A
EGAD00001008529
WGS and RNA-Seq data from a GBM patient PT-SJ5453
Illumina HiSeq 2000,Illumina HiSeq 2500 3
EGAD00001008530
WGS and RNA-Seq data from a GBM patient PT-SS3647
Illumina HiSeq 2000,Illumina HiSeq 2500 3
EGAD00001008531
WGS and RNA-Seq data from a GBM patient PT-WR7927
Illumina HiSeq 2500 1
EGAD00001008532
WGS and RNA-Seq data from a GBM patient PT-WT4796
Illumina HiSeq 2000 1

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