Study
Genome analysis of oesophageal cancer and Barrett's oesophagus
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001002864 | Other |
Study Description
The median survival of oesophageal cancer this year is only 13 to 19 months after diagnosis and more than 90% will die from their disease. Therefore better treatment options are needed. The likelihood of cure for early screen-detected cancers is much higher. Barrett's oesophagus is a pre-cancerous lesion associated with a 30-40 fold increased risk of developing cancer. In an attempt to detect cancer early many patients with Barrett's are enrolled into surveillance programs involving regular endoscopies. A major problem with this approach is that the prevalence of BO in the population is estimated to be around 2%, but most patients with BO will never develop cancer. We are undertaking genomic and/or transcriptomic analysis of oesophageal tumours, Barrett's oesophagus and matched normal samples. The aim is to identify oesophageal-related genomic and transcriptomic alterations, which may reveal mutational process occurring, suggest biomarkers of tumour progression and treatment and identify novel treatment strategies.
Study Datasets 4 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001003996 |
Illumina platform sequencing of whole genome libraries prepared from normal, Barrett's oesophagus and oesophageal cancer samples from 44 donors
|
N/A | |
EGAD00001008554 |
WGS and WES data for manuscript titled: ctDNA as a biomarker of progression in oesophageal adenocarcinoma
|
HiSeq X Ten,Illumina NovaSeq 6000 | 44 |
EGAD00001008646 |
WGS data for manuscript titled: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy
|
HiSeq X Ten | 178 |
EGAD00001008656 |
RNA-Seq data for manuscript titled: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy
|
Illumina HiSeq 2500,Illumina HiSeq 4000,NextSeq 2000 | 79 |
Who archives the data?

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