Clinical activity and molecular correlates of response to atezolizumab alone or in combination with bevacizumab versus sunitinib in renal cell carcinoma.
McDermott DF, Huseni MA, Atkins MB, Motzer RJ, Rini BI, Escudier B, Fong L, Joseph RW, Pal SK, Reeves JA, Sznol M, Hainsworth J, Rathmell WK, Stadler WM, Hutson T, Gore ME, Ravaud A, Bracarda S, Suárez C, Danielli R, Gruenwald V, Choueiri TK, Nickles D, Jhunjhunwala S, Piault-Louis E, Thobhani A, Qiu J, Chen DS, Hegde PS, Schiff C, Fine GD, Powles T.
Nat Med
24 :
2018
749-757
884
PBRM1 loss defines a nonimmunogenic tumor phenotype associated with checkpoint inhibitor resistance in renal carcinoma.
Liu XD, Kong W, Peterson CB, McGrail DJ, Hoang A, Zhang X, Lam T, Pilie PG, Zhu H, Beckermann KE, Haake SM, Isgandrova S, Martinez-Moczygemba M, Sahni N, Tannir NM, Lin SY, Rathmell WK, Jonasch E.
Nat Commun
11 :
2020
2135
128
Escape from nonsense-mediated decay associates with anti-tumor immunogenicity.
Litchfield K, Reading JL, Lim EL, Xu H, Liu P, Al-Bakir M, Wong YNS, Rowan A, Funt SA, Merghoub T, Perkins D, Lauss M, Svane IM, Jönsson G, Herrero J, Larkin J, Quezada SA, Hellmann MD, Turajlic S, Swanton C.
Nat Commun
11 :
2020
3800
76
A pan-cancer analysis of PBAF complex mutations and their association with immunotherapy response.
Hakimi AA, Attalla K, DiNatale RG, Ostrovnaya I, Flynn J, Blum KA, Ged Y, Hoen D, Kendall SM, Reznik E, Bowman A, Hwee J, Fong CJ, Kuo F, Voss MH, Chan TA, Motzer RJ.
Nat Commun
11 :
2020
4168
48
Antagonistic Inflammatory Phenotypes Dictate Tumor Fate and Response to Immune Checkpoint Blockade.
Bonavita E, Bromley CP, Jonsson G, Pelly VS, Sahoo S, Walwyn-Brown K, Mensurado S, Moeini A, Flanagan E, Bell CR, Chiang SC, Chikkanna-Gowda CP, Rogers N, Silva-Santos B, Jaillon S, Mantovani A, Reis e Sousa C, Guerra N, Davis DM, Zelenay S.
Immunity
53 :
2020
1215-1229.e8
166
Transcriptomic signatures of tumors undergoing T cell attack.
Gokuldass A, Schina A, Lauss M, Harbst K, Chamberlain CA, Draghi A, Westergaard MCW, Nielsen M, Papp K, Sztupinszki Z, Csabai I, Svane IM, Szallasi Z, Jönsson G, Donia M.
Cancer Immunol Immunother
71 :
2022
553-563
7
Replication stress response defects are associated with response to immune checkpoint blockade in nonhypermutated cancers.
McGrail DJ, Pilié PG, Dai H, Lam TNA, Liang Y, Voorwerk L, Kok M, Zhang XH, Rosen JM, Heimberger AB, Peterson CB, Jonasch E, Lin SY.
Sci Transl Med
13 :
2021
eabe6201
26
PBRM1 Inactivation Promotes Upregulation of Human Endogenous Retroviruses in a HIF-Dependent Manner.
Zhou M, Leung JY, Gessner KH, Hepperla AJ, Simon JM, Davis IJ, Kim WY.
Cancer Immunol Res
10 :
2022
285-290
16
Decoding the multicellular ecosystem of vena caval tumor thrombus in clear cell renal cell carcinoma by single-cell RNA sequencing.
Shi Y, Zhang Q, Bi H, Lu M, Tan Y, Zou D, Ge L, Chen Z, Liu C, Ci W, Ma L.
Genome Biol
23 :
2022
87
57
Transcriptomic datasets of cancer patients treated with immune-checkpoint inhibitors: a systematic review.
Kovács SA, Győrffy B.
J Transl Med
20 :
2022
249
43
The cuproptosis-associated 13 gene signature as a robust predictor for outcome and response to immune- and targeted-therapies in clear cell renal cell carcinoma.
Yuan H, Qin X, Wang J, Yang Q, Fan Y, Xu D.
Front Immunol
13 :
2022
971142
25
Tumor and immune remodeling following radiotherapy in human renal cell carcinoma.
Chow J, Khan A, Gaudieri M, Wasik BJ, Conway A, Soh KT, Repasky EA, Schwaab T, Wallace PK, Abrams SI, Singh AK, Muhitch JB.
J Immunother Cancer
11 :
2023
e006392
10
Dyskerin and telomerase RNA component are sex-differentially associated with outcomes and Sunitinib response in patients with clear cell renal cell carcinoma.
Yuan H, Qin X, Yang Q, Liu L, Fang Z, Fan Y, Xu D.
Biol Sex Differ
14 :
2023
46
6
Intratumoral T-cell and B-cell receptor architecture associates with distinct immune tumor microenvironment features and clinical outcomes of anti-PD-1/L1 immunotherapy.
Schina A, Sztupinszki Z, Marie Svane I, Szallasi Z, Jönsson G, Donia M.
J Immunother Cancer
11 :
2023
e006941
10
Multiple instance learning to predict immune checkpoint blockade efficacy using neoantigen candidates.
Lang F, Sorn P, Schrörs B, Weber D, Kramer S, Sahin U, Löwer M.
iScience
26 :
2023
108014
2
Histopathology based AI model predicts anti-angiogenic therapy response in renal cancer clinical trial.
Jasti J, Zhong H, Panwar V, Jarmale V, Miyata J, Carrillo D, Christie A, Rakheja D, Modrusan Z, Kadel EE, Beig N, Huseni M, Brugarolas J, Kapur P, Rajaram S.
Nat Commun
16 :
2025
2610
6
IC2Bert: masked gene expression pretraining and supervised fine tuning for robust immune checkpoint blockade (ICB) response prediction.
Park S, Kim S, Jiang P.
Sci Rep
15 :
2025
28044
0
AI-driven multimodal algorithm predicts immunotherapy and targeted therapy outcomes in clear cell renal cell carcinoma.
Stupichev D, Miheecheva N, Postovalova E, Lyu Y, Ramachandran A, Galkin I, Khegai G, Perevoshchikova K, Love A, Menshikova S, Tarasov A, Svekolkin V, Bruttan M, Varlamova A, Kriukov K, Ataullakhanov R, Fowler N, Cheng E, Bagaev A, Hsieh JJ.
Cell Rep Med
6 :
2025
102299
1
Identification and validation of intratumoral microbiome associated with sensitization to immune checkpoint inhibitors.
Chen J, Gao Y, Chen Y, Wang Q, Zhang Y, Huang Y, Xian X, Zhou D, Zhou H, Liu R, Zou Y, Zhang W.
Cell Rep Med
6 :
2025
102306
0
Unravelling the distinct effects of VHL mutations and chromosome 3p loss in clear cell renal cell carcinoma: Implications for prognosis and treatment.
Wang X, Li JR, Chowdhury NR, Wu L, Chao C.
Clin Transl Med
15 :
2025
e70465
0