Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Study ID	Alternative Stable ID	Type
EGAS00001003190		Other

Study ID

Alternative Stable ID

Type

EGAS00001003190

Other

Study Description

Accurate measurement of clonal genotypes, mutational processes, and replication states from individual tumor-cell genomes will facilitate improved understanding of tumor evolution. We have developed DLP+, a scalable single-cell whole-genome sequencing platform implemented using commodity instruments, image-based object recognition, and open source computational methods. Using DLP+, we have generated a resource of 51,926 single-cell genomes and matched cell images from diverse cell types including cell lines, xenografts, and diagnostic samples with limited material. From this resource we have defined variation in mitotic mis-segregation rates across tissue types and genotypes. Analysis of matched genomic and image measurements revealed correlations between cellular morphology and genome ploidy states. Aggregation of cells sharing copy number profiles allowed for calculation of single-nucleotide resolution clonal genotypes and inference of clonal phylogenies and avoided the limitations of bulk deconvolution. Finally, joint analysis over the above features defined clone-specific ... (Show More)

Dataset ID	Description	Technology	Samples
EGAD00001004553	Direct library preparation+ single-cell DNA-sequencing of (i) patient derived triple negative breast cancer xenograft (ii) primary tumour and ascites ovarian cancer cell lines at tumour recurrence. Direct library preparation+ single-cell DNA-sequencing of (i) patient derived triple negative breast cancer xenograft (ii) primary tumour and ascites ovarian cancer cell lines at tumour recurrence.	Illumina HiSeq 2500	980
EGAD00001004719	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1340 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1340 samples; filetype=bam	Illumina HiSeq 2500	1340
EGAD00001004720	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2057 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2057 samples; filetype=bam	Illumina HiSeq 2500	2057
EGAD00001004721	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1970 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1970 samples; filetype=bam	Illumina HiSeq 2500	1970
EGAD00001004722	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2091 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2091 samples; filetype=bam	Illumina HiSeq 2500	2091
EGAD00001004723	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1267 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1267 samples; filetype=bam	Illumina HiSeq 2500	1267
EGAD00001004724	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 230 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 230 samples; filetype=bam	Illumina HiSeq 2500	230
EGAD00001004725	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 232 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 232 samples; filetype=bam	Illumina HiSeq 2500	232
EGAD00001004726	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 239 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 239 samples; filetype=bam	Illumina HiSeq 2500	239
EGAD00001004727	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 692 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 692 samples; filetype=bam	Illumina HiSeq 2500	692
EGAD00001004728	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 612 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 612 samples; filetype=bam	Illumina HiSeq 2500	612
EGAD00001004729	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1700 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1700 samples; filetype=bam	Illumina HiSeq 2500	1700
EGAD00001004730	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 628 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 628 samples; filetype=bam	Illumina HiSeq 2500	628
EGAD00001004731	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 596 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 596 samples; filetype=bam	Illumina HiSeq 2500	596
EGAD00001004732	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1735 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1735 samples; filetype=bam	Illumina HiSeq 2500	1735
EGAD00001004733	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 585 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 585 samples; filetype=bam	NextSeq 550	585
EGAD00001004734	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 766 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 766 samples; filetype=bam	NextSeq 550	766
EGAD00001004735	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2055 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2055 samples; filetype=bam	Illumina HiSeq 2500	2055
EGAD00001004736	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 620 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 620 samples; filetype=bam	Illumina HiSeq 2500	620
EGAD00001004737	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 624 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 624 samples; filetype=bam	NextSeq 550	624
EGAD00001004738	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 481 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 481 samples; filetype=bam	NextSeq 550	481
EGAD00001004739	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 378 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 378 samples; filetype=bam	Illumina HiSeq 2500	378
EGAD00001004740	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 735 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 735 samples; filetype=bam	Illumina HiSeq 2500	735
EGAD00001004741	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 718 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 718 samples; filetype=bam	Illumina HiSeq 2500	718
EGAD00001004742	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 493 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 493 samples; filetype=bam	NextSeq 550	493
EGAD00001004743	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam	Illumina HiSeq 2500	1222
EGAD00001004744	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam	Illumina HiSeq 2500	522
EGAD00001004745	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 488 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 488 samples; filetype=bam	Illumina HiSeq 2500	488
EGAD00001004746	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 509 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 509 samples; filetype=bam	NextSeq 550	509
EGAD00001004747	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 604 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 604 samples; filetype=bam	NextSeq 550	604
EGAD00001004748	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 626 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 626 samples; filetype=bam	NextSeq 550	626
EGAD00001004749	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples; filetype=bam	Illumina HiSeq 2500	635
EGAD00001004750	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1522 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1522 samples; filetype=bam	HiSeq X Five	1522
EGAD00001004751	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 465 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 465 samples; filetype=bam	NextSeq 550	465
EGAD00001004752	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 606 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 606 samples; filetype=bam	Illumina HiSeq 2500	606
EGAD00001004753	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 615 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 615 samples; filetype=bam	NextSeq 550	615
EGAD00001004754	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 636 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 636 samples; filetype=bam	NextSeq 550	636
EGAD00001004755	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 968 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 968 samples; filetype=bam	HiSeq X Five	968
EGAD00001004756	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 480 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 480 samples; filetype=bam	NextSeq 550	480
EGAD00001004757	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 561 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 561 samples; filetype=bam	NextSeq 550	561
EGAD00001004758	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 844 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 844 samples; filetype=bam	HiSeq X Five	844
EGAD00001004759	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 928 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 928 samples; filetype=bam	HiSeq X Five	928
EGAD00001004760	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples	HiSeq X Five	635
EGAD00001004761	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1072 samples Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1072 samples	HiSeq X Five	1072
EGAD00001004762	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1436 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1436 samples; filetype=bam	HiSeq X Five	1436
EGAD00001004763	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 589 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 589 samples; filetype=bam	HiSeq X Five	589
EGAD00001004764	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 656 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 656 samples; filetype=bam	HiSeq X Five	656
EGAD00001004765	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 648 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 648 samples; filetype=bam	HiSeq X Five	648
EGAD00001004766	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 375 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 375 samples; filetype=bam	HiSeq X Five	375
EGAD00001004767	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 755 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 755 samples; filetype=bam	HiSeq X Five	755
EGAD00001004768	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 492 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 492 samples; filetype=bam	HiSeq X Five	492
EGAD00001004769	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 531 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 531 samples; filetype=bam	HiSeq X Five	531
EGAD00001004770	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam	HiSeq X Five	1063
EGAD00001004771	Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam	HiSeq X Five,Illumina HiSeq 2500	742
EGAD00001005338	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96146A 1195 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96146A 1195 samples; filetype=bam	HiSeq X Five	3
EGAD00001005340	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96172B 1694 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96172B 1694 samples; filetype=bam	HiSeq X Five	3
EGAD00001005345	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96226B 1274 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96226B 1274 samples; filetype=bam	HiSeq X Five	4
EGAD00001005347	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96193B 2410 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96193B 2410 samples; filetype=bam	HiSeq X Five	3
EGAD00001005348	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199A 843 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199A 843 samples; filetype=bam	HiSeq X Five	3
EGAD00001005353	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199B 1170 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199B 1170 samples; filetype=bam	HiSeq X Five	3
EGAD00001005354	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96211C 1397 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96211C 1397 samples; filetype=bam	HiSeq X Five	3
EGAD00001005355	Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96225C 1034 samples; filetype=bam Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96225C 1034 samples; filetype=bam	HiSeq X Five	2
EGAD00001007756	OV2295-052021 dataset OV2295-052021 dataset	Illumina HiSeq 2000	1

Dataset ID

Description

Technology

Samples

EGAD00001004553

Direct library preparation+ single-cell DNA-sequencing of (i) patient derived triple negative breast cancer xenograft (ii) primary tumour and ascites ovarian cancer cell lines at tumour recurrence.

Illumina HiSeq 2500

980

EGAD00001004719

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1340 samples; filetype=bam

Illumina HiSeq 2500

1340

EGAD00001004720

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2057 samples; filetype=bam

Illumina HiSeq 2500

2057

EGAD00001004721

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1970 samples; filetype=bam

Illumina HiSeq 2500

1970

EGAD00001004722

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2091 samples; filetype=bam

Illumina HiSeq 2500

2091

EGAD00001004723

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1267 samples; filetype=bam

Illumina HiSeq 2500

1267

EGAD00001004724

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 230 samples; filetype=bam

Illumina HiSeq 2500

230

EGAD00001004725

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 232 samples; filetype=bam

Illumina HiSeq 2500

232

EGAD00001004726

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 239 samples; filetype=bam

Illumina HiSeq 2500

239

EGAD00001004727

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 692 samples; filetype=bam

Illumina HiSeq 2500

692

EGAD00001004728

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 612 samples; filetype=bam

Illumina HiSeq 2500

612

EGAD00001004729

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1700 samples; filetype=bam

Illumina HiSeq 2500

1700

EGAD00001004730

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 628 samples; filetype=bam

Illumina HiSeq 2500

628

EGAD00001004731

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 596 samples; filetype=bam

Illumina HiSeq 2500

596

EGAD00001004732

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1735 samples; filetype=bam

Illumina HiSeq 2500

1735

EGAD00001004733

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 585 samples; filetype=bam

NextSeq 550

585

EGAD00001004734

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 766 samples; filetype=bam

NextSeq 550

766

EGAD00001004735

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 2055 samples; filetype=bam

Illumina HiSeq 2500

2055

EGAD00001004736

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 620 samples; filetype=bam

Illumina HiSeq 2500

620

EGAD00001004737

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 624 samples; filetype=bam

NextSeq 550

624

EGAD00001004738

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 481 samples; filetype=bam

NextSeq 550

481

EGAD00001004739

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 378 samples; filetype=bam

Illumina HiSeq 2500

378

EGAD00001004740

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 735 samples; filetype=bam

Illumina HiSeq 2500

735

EGAD00001004741

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 718 samples; filetype=bam

Illumina HiSeq 2500

718

EGAD00001004742

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 493 samples; filetype=bam

NextSeq 550

493

EGAD00001004743

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam

Illumina HiSeq 2500

1222

EGAD00001004744

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam

Illumina HiSeq 2500

522

EGAD00001004745

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 488 samples; filetype=bam

Illumina HiSeq 2500

488

EGAD00001004746

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 509 samples; filetype=bam

NextSeq 550

509

EGAD00001004747

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 604 samples; filetype=bam

NextSeq 550

604

EGAD00001004748

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 626 samples; filetype=bam

NextSeq 550

626

EGAD00001004749

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples; filetype=bam

Illumina HiSeq 2500

635

EGAD00001004750

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1522 samples; filetype=bam

HiSeq X Five

1522

EGAD00001004751

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 465 samples; filetype=bam

NextSeq 550

465

EGAD00001004752

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 606 samples; filetype=bam

Illumina HiSeq 2500

606

EGAD00001004753

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 615 samples; filetype=bam

NextSeq 550

615

EGAD00001004754

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 636 samples; filetype=bam

NextSeq 550

636

EGAD00001004755

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 968 samples; filetype=bam

HiSeq X Five

968

EGAD00001004756

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 480 samples; filetype=bam

NextSeq 550

480

EGAD00001004757

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 561 samples; filetype=bam

NextSeq 550

561

EGAD00001004758

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 844 samples; filetype=bam

HiSeq X Five

844

EGAD00001004759

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 928 samples; filetype=bam

HiSeq X Five

928

EGAD00001004760

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 635 samples

HiSeq X Five

635

EGAD00001004761

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1072 samples

HiSeq X Five

1072

EGAD00001004762

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1436 samples; filetype=bam

HiSeq X Five

1436

EGAD00001004763

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 589 samples; filetype=bam

HiSeq X Five

589

EGAD00001004764

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 656 samples; filetype=bam

HiSeq X Five

656

EGAD00001004765

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 648 samples; filetype=bam

HiSeq X Five

648

EGAD00001004766

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 375 samples; filetype=bam

HiSeq X Five

375

EGAD00001004767

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 755 samples; filetype=bam

HiSeq X Five

755

EGAD00001004768

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 492 samples; filetype=bam

HiSeq X Five

492

EGAD00001004769

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 531 samples; filetype=bam

HiSeq X Five

531

EGAD00001004770

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 1222 samples; filetype=bam

HiSeq X Five

1063

EGAD00001004771

Transposase-based amplification-free single-cell genome direct library preparation in nanowell chips; 522 samples; filetype=bam

HiSeq X Five,Illumina HiSeq 2500

742

EGAD00001005338

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96146A 1195 samples; filetype=bam

HiSeq X Five

EGAD00001005340

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96172B 1694 samples; filetype=bam

HiSeq X Five

EGAD00001005345

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96226B 1274 samples; filetype=bam

HiSeq X Five

EGAD00001005347

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96193B 2410 samples; filetype=bam

HiSeq X Five

EGAD00001005348

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199A 843 samples; filetype=bam

HiSeq X Five

EGAD00001005353

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96199B 1170 samples; filetype=bam

HiSeq X Five

EGAD00001005354

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96211C 1397 samples; filetype=bam

HiSeq X Five

EGAD00001005355

Whole genome sequencing of single cells identifies stochastic aneuploidies, genome replication, states, and clonal repertoires for library A96225C 1034 samples; filetype=bam

HiSeq X Five

EGAD00001007756

OV2295-052021 dataset

Illumina HiSeq 2000

Study

Study Description

Study Datasets 63 datasets.

Who archives the data?

Publications

Citations

The European Genome-phenome Archive (EGA) is part of the ELIXIR infrastructure.