Study
Single-cell atlas of the developing brain to investigate the cellular origins of pediatric brain tumors
Study ID | Alternative Stable ID | Type |
---|---|---|
EGAS00001003368 | RNASeq |
Study Description
Study Datasets 4 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001005128 |
We profiled two human fetal brainstem specimens at 17 and 19 post-conception weeks by single-cell RNA-seq using 10X Chromium Single Cell 3'. The BAM files are provided.
|
Illumina HiSeq 4000 | 2 |
EGAD00001005129 |
We profiled 11 patient tumor samples by single-cell and single-nuclei RNA-seq using 10X Chromium 3'. These include samples from the following entities: WNT-subtype medulloblastoma (N=3), embryonal tumors with multilayered rosettes (N=3), and atypical teratoid-rhabdoid tumors (N=5). The BAM files are provided.
|
Illumina HiSeq 4000,unspecified | 11 |
EGAD00001005130 |
We profiled 43 normal human adult brain and 11 normal human fetal brain specimens by bulk RNA-seq. The raw fastqs are provided.
|
unspecified | 54 |
EGAD00001005131 |
We profiled 186 patient tumor samples by bulk RNA-seq. These includes 38 embryonal brain tumors, 101 high-grade gliomas, 24 low-grade gliomas, 10 medulloblastoma and 13 matched normals. The raw fastqs are provided.
|
Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 4000,unspecified | 186 |
Who archives the data?

Publications
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