Study

Single-cell atlas of the developing brain to investigate the cellular origins of pediatric brain tumors

Study ID Alternative Stable ID Type
EGAS00001003368 RNASeq

Study Description

Study Datasets 4 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001005128
We profiled two human fetal brainstem specimens at 17 and 19 post-conception weeks by single-cell RNA-seq using 10X Chromium Single Cell 3'. The BAM files are provided.
Illumina HiSeq 4000 2
EGAD00001005129
We profiled 11 patient tumor samples by single-cell and single-nuclei RNA-seq using 10X Chromium 3'. These include samples from the following entities: WNT-subtype medulloblastoma (N=3), embryonal tumors with multilayered rosettes (N=3), and atypical teratoid-rhabdoid tumors (N=5). The BAM files are provided.
Illumina HiSeq 4000,unspecified 11
EGAD00001005130
We profiled 43 normal human adult brain and 11 normal human fetal brain specimens by bulk RNA-seq. The raw fastqs are provided.
unspecified 54
EGAD00001005131
We profiled 186 patient tumor samples by bulk RNA-seq. These includes 38 embryonal brain tumors, 101 high-grade gliomas, 24 low-grade gliomas, 10 medulloblastoma and 13 matched normals. The raw fastqs are provided.
Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 4000,unspecified 186

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