Chromatin_accessability_in_cytokine_induced_immune_cell_states

We isolated T cells and monocotyes from healthy platelet donors and cultured them in resting and stimulated conditions with addition of a range of cytokines. We performed ATAC sequencing to assess the chromatin accessability in different cytokines treated cells. These cellular profiles were used to map risk variants to the cytokine-induced cell states relevant for autoimmune diseases.

Type: Epigenetics
Archiver: EGA European Genome-Phenome Archive

1 Dataset 1 Publication

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Dataset ID	Description	Technology	Samples
EGAD00001004831	We isolated T cells and monocotyes from healthy platelet donors and cultured them in resting and stimulated conditions with addition of a range of cytokines. We performed ATAC sequencing to assess the chromatin accessability in different cytokines treated cells. These cellular profiles were used to map risk variants to the cytokine-induced cell states relevant for autoimmune diseases. . This dataset contains all the data available for this study on 2019-03-11.	Illumina HiSeq 2500 Illumina MiSeq	183

Publications	Citations
Chromatin activity at GWAS loci identifies T cell states driving complex immune diseases. Soskic B, Cano-Gamez E, Smyth DJ, Rowan WC, Nakic N, Esparza-Gordillo J, Bossini-Castillo L, Tough DF, Larminie CGC, Bronson PG, Willé D, Trynka G. Nat Genet 51: 2019 1486-1493	41