Study
Genetic and expression landscape of Waldenstrom macroglobulinemia
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001003603 | Other |
Study Description
Exome analyses for the identification of somatic mutation in Waldenstrom macroglobulinemia by comparison of tumor and CD3+(germ line control) population in 16 patients.
transcription profiling of a series of Waldenstrom macroglobulinemia samples
Study Datasets 4 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001005322 |
DNA extracted from sorted CD19+ tumor cells (18 samples - 16 patients) was used for exome capture with the SureSelect All Exon Kit following the standard protocols. Paired-end sequencing (2 x 100 bp) was performed using HiSeq2000 sequencing instruments. The files are in FASTQ format.
|
Illumina HiSeq 2000 | 18 |
| EGAD00001005323 |
DNA extracted from sorted CD3+ cells (16 patients) was used for exome capture with the SureSelect All Exon Kit following the standard protocols. Paired-end sequencing (2 x 100 bp) was performed using HiSeq2000 sequencing instruments.The files are in FASTQ format.
|
Illumina HiSeq 2000 | 16 |
| EGAD00001005324 |
RNA was extracted from flow-sorted CD19+. RNA-Seq was performed on 32 samples of 30 patients (2 replicates per samples). RNA-Seq libraries were subjected to non-stranded paired-end (2 x 75 bp) sequencing on HiSeq 2500 (Illumina). The files are in FASTQ format.
|
Illumina HiSeq 2500 | 64 |
| EGAD00010001861 |
Genome-wide DNA methylation profiling of Waldenstrom's macroglobulinemia (WM) patient samples
|
Infinium MethylationEPIC Kit (Illumina) | 48 |
Who archives the data?
