Study

Genetic and expression landscape of Waldenstrom macroglobulinemia

Study ID Alternative Stable ID Type
EGAS00001003603 Other

Study Description

Exome analyses for the identification of somatic mutation in Waldenstrom macroglobulinemia by comparison of tumor and CD3+(germ line control) population in 16 patients. transcription profiling of a series of Waldenstrom macroglobulinemia samples

Study Datasets 4 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001005322
DNA extracted from sorted CD19+ tumor cells (18 samples - 16 patients) was used for exome capture with the SureSelect All Exon Kit following the standard protocols. Paired-end sequencing (2 x 100 bp) was performed using HiSeq2000 sequencing instruments. The files are in FASTQ format.
Illumina HiSeq 2000 18
EGAD00001005323
DNA extracted from sorted CD3+ cells (16 patients) was used for exome capture with the SureSelect All Exon Kit following the standard protocols. Paired-end sequencing (2 x 100 bp) was performed using HiSeq2000 sequencing instruments.The files are in FASTQ format.
Illumina HiSeq 2000 16
EGAD00001005324
RNA was extracted from flow-sorted CD19+. RNA-Seq was performed on 32 samples of 30 patients (2 replicates per samples). RNA-Seq libraries were subjected to non-stranded paired-end (2 x 75 bp) sequencing on HiSeq 2500 (Illumina). The files are in FASTQ format.
Illumina HiSeq 2500 64
EGAD00010001861
Genome-wide DNA methylation profiling of Waldenstrom's macroglobulinemia (WM) patient samples
Infinium MethylationEPIC Kit (Illumina) 48

Who archives the data?

There are no publications available